Top 10 genes with highest correlation to Rv1401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1638/uvrA | (cc=0.6868) | info on Rv1638/uvrA |
| Rv0003/recF | (cc=0.6291) | info on Rv0003/recF |
| Rv1633/uvrB | (cc=0.6251) | info on Rv1633/uvrB |
| Rv2737c/recA | (cc=0.6117) | info on Rv2737c/recA |
| Rv3715c/recR | (cc=0.6015) | info on Rv3715c/recR |
| Rv3201c/- | (cc=0.6008) | info on Rv3201c/- |
| Rv0949/uvrD1 | (cc=0.589) | info on Rv0949/uvrD1 |
| Rv3919c/gid | (cc=0.5855) | info on Rv3919c/gid |
| Rv2362c/recO | (cc=0.5745) | info on Rv2362c/recO |
| Rv2535c/pepQ | (cc=0.5598) | info on Rv2535c/pepQ |
Correlation of Rv1401/- with Rv1638/uvrA
Normalized LFCs for Rv1401/-:
(description and provenance of datasets)
| Rv1401/- | Rv1638/uvrA | |
| Fe_supp_jason_reseq | 1.253 | 2.005 |
| low_pH_jason_reseq | -0.979 | -0.842 |
| NO_jason_reseq | 0.0 | -0.874 |
| B6_jason_reseq | -0.649 | -1.019 |
| MHCII_jason_reseq | -0.437 | -1.251 |
| Isoniazid02 | -0.195 | -0.061 |
| Rifampicin4 | 0.49 | -1.11 |
| Ethambutol3 | 0.384 | 0.542 |
| Meropenem3 | -0.292 | -0.628 |
| Vancomycin16 | 0.167 | -0.764 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.433 | -0.563 |
| hypoxia_3wks | -1.284 | -1.204 |
| hypoxia_6wks | -1.345 | -1.817 |
| glycerol | 1.204 | 1.654 |
| cholesterol | 0.492 | 0.773 |
| AJ | 0.65 | -0.242 |
| Bibs02 | -0.502 | -0.294 |
| Bibs02c | -0.365 | 0.382 |
| BL6 | 1.049 | 0.63 |
| BL6a | 0.296 | 0.997 |
| BXD01 | 1.309 | 0.486 |
| BXD010 | 0.764 | -0.206 |
| BXD011 | 0.0 | 0.475 |
| BXD03 | 0.536 | 0.189 |
| BXD04 | 0.096 | 0.372 |
| BXD05 | 1.028 | 0.3 |
| BXD06 | 1.07 | 0.498 |
| BXD07 | 1.11 | 0.194 |
| BXD08 | 1.454 | 0.297 |
| BXD09 | 0.632 | 0.572 |
| CAST | -0.632 | -0.809 |
| CCcont | 2.605 | 2.708 |
| DS01 | 0.183 | -0.12 |
| DS02 | 0.473 | 0.0 |
| DS04 | 0.29 | 0.094 |
| DS0c | -0.379 | 0.652 |
| GP01 | -0.271 | -0.28 |
| GP02 | -0.228 | 0.339 |
| GP0c | -0.108 | 0.942 |
| NOD | 0.0 | -1.126 |
| NZO | -0.348 | -0.701 |
| PWK | -0.539 | -0.433 |
| H37Rv_KO_CtpC | 0.644 | 1.331 |
| H37Rv_KO_CtpD | -0.221 | 0.558 |
| H37Rv_KO_Rv1272 | 1.542 | 0.71 |
| H37Rv_KO_SugABC | 2.384 | 1.472 |
| H37Rv_KO_MbtN | 0.614 | 1.713 |
| Trans05 | 0.718 | 0.344 |
| macrophage_unactivated | 1.25 | 1.382 |
| IL1 | -1.011 | -0.436 |
| Rapamycin | -0.491 | -0.295 |
| Tcell | 0.469 | 0.0 |
| GMCSF | -1.444 | -0.671 |
| IFNab | -0.236 | 0.771 |
| IFNg | -0.428 | -0.679 |
| IFNg_GMCSF1 | -0.503 | -0.625 |
| Rv1432_day32 | 0.0 | -1.562 |
| Rv1565c_day32 | -0.218 | -0.269 |
| secA2_input | 1.136 | 0.783 |
| delta_Rv3594 | 1.869 | 0.39 |
| delta_Rv3717 | 0.344 | -0.415 |
| delta_Rv3811 | 1.15 | 0.095 |
| delta_Rv0954 | -0.163 | 0.499 |
| PonA1 | -0.479 | -0.504 |
| EccD1_KO | 1.365 | 0.329 |
| EspI_KO | -1.144 | -0.128 |
| PE35_KO | 1.304 | 0.817 |
| PPE68_KO | 1.43 | 1.161 |
| glycerol2 | -1.597 | -1.562 |
| lignocerate | -0.762 | -1.816 |
| oleate | -1.932 | -1.904 |
| phosphatidylcholine | -1.515 | -2.088 |
| acetate | -0.161 | -0.143 |
| glucAc | 0.094 | 0.356 |
| Rv0950ko | -0.271 | -0.302 |
| Rv1096ko | 1.538 | -0.663 |
| Rv3684ko | 1.67 | -0.72 |
| delta_otsA_trehalose | 1.054 | 0.081 |