Top 10 genes with highest correlation to Rv1322/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2793c/truB | (cc=0.4631) | info on Rv2793c/truB |
| Rv0336/- | (cc=0.4551) | info on Rv0336/- |
| Rv0830/- | (cc=0.4531) | info on Rv0830/- |
| Rv0814c/sseC2 | (cc=0.4518) | info on Rv0814c/sseC2 |
| Rv2118c/- | (cc=0.4506) | info on Rv2118c/- |
| Rv1215c/- | (cc=0.4443) | info on Rv1215c/- |
| Rv0563/htpX | (cc=0.4311) | info on Rv0563/htpX |
| Rv3098c/- | (cc=0.426) | info on Rv3098c/- |
| Rv2195/qcrA | (cc=0.4244) | info on Rv2195/qcrA |
| Rv0833/PE_PGRS13 | (cc=0.4135) | info on Rv0833/PE_PGRS13 |
Correlation of Rv1322/- with Rv0833/PE_PGRS13
Normalized LFCs for Rv1322/-:
(description and provenance of datasets)
| Rv1322/- | Rv0833/PE_PGRS13 | |
| Fe_supp_jason_reseq | -0.049 | -0.923 |
| low_pH_jason_reseq | 1.201 | -0.284 |
| NO_jason_reseq | 0.827 | 0.205 |
| B6_jason_reseq | -0.064 | -0.52 |
| MHCII_jason_reseq | -0.895 | -0.694 |
| Isoniazid02 | -1.106 | 0.469 |
| Rifampicin4 | -0.333 | 0.872 |
| Ethambutol3 | 0.071 | 0.27 |
| Meropenem3 | 0.913 | 0.0 |
| Vancomycin16 | 0.751 | 0.589 |
| Rv2680_day32 | -1.054 | -0.082 |
| H37Rv_KO_MarP | -0.11 | -0.525 |
| hypoxia_3wks | 0.77 | 0.706 |
| hypoxia_6wks | 0.365 | -0.274 |
| glycerol | -1.3 | 0.686 |
| cholesterol | 0.116 | 0.574 |
| AJ | 0.77 | 1.771 |
| Bibs02 | 1.652 | 0.621 |
| Bibs02c | 0.787 | 1.678 |
| BL6 | 1.305 | -0.104 |
| BL6a | 0.627 | 0.993 |
| BXD01 | 0.471 | 0.101 |
| BXD010 | 0.425 | 0.928 |
| BXD011 | -0.33 | 0.0 |
| BXD03 | -0.388 | 1.084 |
| BXD04 | -0.053 | 0.793 |
| BXD05 | 1.101 | 0.377 |
| BXD06 | 0.597 | 0.199 |
| BXD07 | -0.488 | 0.301 |
| BXD08 | 1.778 | 0.452 |
| BXD09 | 0.131 | 0.305 |
| CAST | 2.676 | 0.782 |
| CCcont | -0.248 | -0.124 |
| DS01 | 0.436 | -0.412 |
| DS02 | 1.679 | 0.0 |
| DS04 | 0.156 | 0.0 |
| DS0c | -0.256 | -0.379 |
| GP01 | 1.34 | 1.185 |
| GP02 | 1.875 | 2.978 |
| GP0c | 1.32 | 1.594 |
| NOD | 0.675 | 1.884 |
| NZO | 0.9 | 0.298 |
| PWK | 1.421 | 0.426 |
| H37Rv_KO_CtpC | 2.814 | 0.353 |
| H37Rv_KO_CtpD | -1.258 | 0.635 |
| H37Rv_KO_Rv1272 | 1.315 | 0.479 |
| H37Rv_KO_SugABC | -0.704 | -0.272 |
| H37Rv_KO_MbtN | -0.405 | -0.283 |
| Trans05 | 1.981 | 0.588 |
| macrophage_unactivated | -1.25 | -0.783 |
| IL1 | -0.175 | -1.967 |
| Rapamycin | -0.773 | -1.679 |
| Tcell | 0.57 | -1.782 |
| GMCSF | 0.401 | -0.422 |
| IFNab | -0.738 | -2.382 |
| IFNg | 0.422 | -0.911 |
| IFNg_GMCSF1 | 0.424 | -1.071 |
| Rv1432_day32 | 0.859 | 0.661 |
| Rv1565c_day32 | -0.618 | -1.054 |
| secA2_input | -0.759 | -0.861 |
| delta_Rv3594 | -2.354 | 0.0 |
| delta_Rv3717 | -2.318 | -0.508 |
| delta_Rv3811 | -1.679 | -0.149 |
| delta_Rv0954 | -1.553 | -1.333 |
| PonA1 | 0.394 | 0.451 |
| EccD1_KO | 0.868 | 0.49 |
| EspI_KO | 0.208 | 0.26 |
| PE35_KO | -0.099 | -0.283 |
| PPE68_KO | 0.208 | -0.205 |
| glycerol2 | -0.247 | -0.392 |
| lignocerate | -0.241 | -0.613 |
| oleate | 0.829 | -0.397 |
| phosphatidylcholine | 0.573 | -0.253 |
| acetate | 0.063 | 0.507 |
| glucAc | -0.779 | 0.165 |
| Rv0950ko | 1.71 | 0.621 |
| Rv1096ko | 0.157 | 1.08 |
| Rv3684ko | 0.242 | 0.462 |
| delta_otsA_trehalose | -0.667 | 0.0 |