Top 10 genes with highest correlation to Rv1322/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2793c/truB | (cc=0.4631) | info on Rv2793c/truB |
| Rv0336/- | (cc=0.4551) | info on Rv0336/- |
| Rv0830/- | (cc=0.4531) | info on Rv0830/- |
| Rv0814c/sseC2 | (cc=0.4518) | info on Rv0814c/sseC2 |
| Rv2118c/- | (cc=0.4506) | info on Rv2118c/- |
| Rv1215c/- | (cc=0.4443) | info on Rv1215c/- |
| Rv0563/htpX | (cc=0.4311) | info on Rv0563/htpX |
| Rv3098c/- | (cc=0.426) | info on Rv3098c/- |
| Rv2195/qcrA | (cc=0.4244) | info on Rv2195/qcrA |
| Rv0833/PE_PGRS13 | (cc=0.4135) | info on Rv0833/PE_PGRS13 |
Correlation of Rv1322/- with Rv0563/htpX
Normalized LFCs for Rv1322/-:
(description and provenance of datasets)
| Rv1322/- | Rv0563/htpX | |
| Fe_supp_jason_reseq | -0.049 | 1.76 |
| low_pH_jason_reseq | 1.201 | 3.803 |
| NO_jason_reseq | 0.827 | 0.845 |
| B6_jason_reseq | -0.064 | 1.318 |
| MHCII_jason_reseq | -0.895 | -1.332 |
| Isoniazid02 | -1.106 | -2.187 |
| Rifampicin4 | -0.333 | -2.342 |
| Ethambutol3 | 0.071 | 1.796 |
| Meropenem3 | 0.913 | 0.034 |
| Vancomycin16 | 0.751 | -2.435 |
| Rv2680_day32 | -1.054 | 0.241 |
| H37Rv_KO_MarP | -0.11 | -3.429 |
| hypoxia_3wks | 0.77 | 1.236 |
| hypoxia_6wks | 0.365 | -0.672 |
| glycerol | -1.3 | -0.579 |
| cholesterol | 0.116 | -0.773 |
| AJ | 0.77 | 1.479 |
| Bibs02 | 1.652 | 0.216 |
| Bibs02c | 0.787 | 0.399 |
| BL6 | 1.305 | 1.054 |
| BL6a | 0.627 | 1.263 |
| BXD01 | 0.471 | 1.681 |
| BXD010 | 0.425 | 1.54 |
| BXD011 | -0.33 | 0.722 |
| BXD03 | -0.388 | 2.623 |
| BXD04 | -0.053 | 2.885 |
| BXD05 | 1.101 | 1.003 |
| BXD06 | 0.597 | 1.906 |
| BXD07 | -0.488 | 2.27 |
| BXD08 | 1.778 | 2.084 |
| BXD09 | 0.131 | 1.131 |
| CAST | 2.676 | 1.94 |
| CCcont | -0.248 | 1.835 |
| DS01 | 0.436 | 0.76 |
| DS02 | 1.679 | -1.161 |
| DS04 | 0.156 | -0.259 |
| DS0c | -0.256 | 0.413 |
| GP01 | 1.34 | 0.318 |
| GP02 | 1.875 | -0.638 |
| GP0c | 1.32 | 0.335 |
| NOD | 0.675 | 3.414 |
| NZO | 0.9 | 1.527 |
| PWK | 1.421 | 3.844 |
| H37Rv_KO_CtpC | 2.814 | 3.597 |
| H37Rv_KO_CtpD | -1.258 | -0.363 |
| H37Rv_KO_Rv1272 | 1.315 | -0.329 |
| H37Rv_KO_SugABC | -0.704 | 0.797 |
| H37Rv_KO_MbtN | -0.405 | 0.196 |
| Trans05 | 1.981 | 2.303 |
| macrophage_unactivated | -1.25 | 0.48 |
| IL1 | -0.175 | -0.397 |
| Rapamycin | -0.773 | -1.114 |
| Tcell | 0.57 | 1.193 |
| GMCSF | 0.401 | 0.834 |
| IFNab | -0.738 | 1.466 |
| IFNg | 0.422 | -0.754 |
| IFNg_GMCSF1 | 0.424 | 0.386 |
| Rv1432_day32 | 0.859 | 0.763 |
| Rv1565c_day32 | -0.618 | -0.924 |
| secA2_input | -0.759 | 1.371 |
| delta_Rv3594 | -2.354 | -1.634 |
| delta_Rv3717 | -2.318 | -3.374 |
| delta_Rv3811 | -1.679 | -1.28 |
| delta_Rv0954 | -1.553 | -3.76 |
| PonA1 | 0.394 | -1.401 |
| EccD1_KO | 0.868 | 2.125 |
| EspI_KO | 0.208 | 1.882 |
| PE35_KO | -0.099 | -0.187 |
| PPE68_KO | 0.208 | 1.123 |
| glycerol2 | -0.247 | 0.369 |
| lignocerate | -0.241 | 0.168 |
| oleate | 0.829 | 0.196 |
| phosphatidylcholine | 0.573 | 0.368 |
| acetate | 0.063 | 1.539 |
| glucAc | -0.779 | 0.0 |
| Rv0950ko | 1.71 | 0.0 |
| Rv1096ko | 0.157 | 3.29 |
| Rv3684ko | 0.242 | 2.613 |
| delta_otsA_trehalose | -0.667 | 2.344 |