Top 10 genes with highest correlation to Rv1302/rfe:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0110/- | (cc=0.4599) | info on Rv0110/- |
| Rv0877/- | (cc=0.4526) | info on Rv0877/- |
| Rv0047c/- | (cc=0.444) | info on Rv0047c/- |
| Rv0158/- | (cc=0.4328) | info on Rv0158/- |
| Rv2957/- | (cc=0.4311) | info on Rv2957/- |
| Rv0182c/sigG | (cc=0.4139) | info on Rv0182c/sigG |
| Rv1072/- | (cc=0.407) | info on Rv1072/- |
| Rv2617c/- | (cc=0.4012) | info on Rv2617c/- |
| Rv3853/rraA | (cc=0.3996) | info on Rv3853/rraA |
| Rv2079/- | (cc=0.3978) | info on Rv2079/- |
Correlation of Rv1302/rfe with Rv3853/rraA
Normalized LFCs for Rv1302/rfe:
(description and provenance of datasets)
| Rv1302/rfe | Rv3853/rraA | |
| Fe_supp_jason_reseq | 1.437 | 1.086 |
| low_pH_jason_reseq | 0.465 | -0.44 |
| NO_jason_reseq | 1.173 | 0.874 |
| B6_jason_reseq | 0.957 | 0.296 |
| MHCII_jason_reseq | -0.309 | -2.243 |
| Isoniazid02 | 0.453 | -0.314 |
| Rifampicin4 | -0.192 | -1.922 |
| Ethambutol3 | 0.732 | -0.505 |
| Meropenem3 | 0.502 | -0.151 |
| Vancomycin16 | 0.18 | -0.218 |
| Rv2680_day32 | 1.779 | 2.115 |
| H37Rv_KO_MarP | -0.766 | 0.697 |
| hypoxia_3wks | -0.14 | -0.279 |
| hypoxia_6wks | -0.146 | -0.781 |
| glycerol | -0.054 | 0.452 |
| cholesterol | -1.01 | -0.044 |
| AJ | 0.674 | -0.983 |
| Bibs02 | -0.968 | -0.204 |
| Bibs02c | -0.268 | -0.456 |
| BL6 | -1.086 | -0.603 |
| BL6a | 0.154 | -0.547 |
| BXD01 | 0.737 | 0.067 |
| BXD010 | 0.115 | -0.908 |
| BXD011 | 0.931 | -1.463 |
| BXD03 | -0.444 | 0.269 |
| BXD04 | 0.228 | -0.213 |
| BXD05 | 0.201 | -1.125 |
| BXD06 | 0.786 | -0.628 |
| BXD07 | 0.285 | -0.771 |
| BXD08 | 1.099 | 0.231 |
| BXD09 | 0.88 | -0.346 |
| CAST | 1.525 | 0.249 |
| CCcont | -0.791 | -0.383 |
| DS01 | -0.527 | -2.057 |
| DS02 | -0.09 | -2.05 |
| DS04 | -0.672 | -1.376 |
| DS0c | -0.671 | -1.966 |
| GP01 | 1.155 | 1.966 |
| GP02 | 0.603 | 0.94 |
| GP0c | 0.907 | 0.491 |
| NOD | 0.952 | 2.93 |
| NZO | 0.053 | -3.112 |
| PWK | 0.026 | -0.155 |
| H37Rv_KO_CtpC | 1.292 | -0.634 |
| H37Rv_KO_CtpD | 1.526 | 0.252 |
| H37Rv_KO_Rv1272 | 0.598 | 0.989 |
| H37Rv_KO_SugABC | 0.171 | -1.651 |
| H37Rv_KO_MbtN | 1.816 | 1.625 |
| Trans05 | 0.611 | -0.31 |
| macrophage_unactivated | -0.069 | 1.146 |
| IL1 | -0.332 | 0.151 |
| Rapamycin | -1.295 | -0.08 |
| Tcell | 0.404 | 1.906 |
| GMCSF | -0.615 | -1.682 |
| IFNab | -0.704 | 0.514 |
| IFNg | 0.168 | -0.286 |
| IFNg_GMCSF1 | -0.654 | 0.462 |
| Rv1432_day32 | 0.305 | -0.244 |
| Rv1565c_day32 | -0.294 | -0.706 |
| secA2_input | 1.169 | 0.615 |
| delta_Rv3594 | -0.369 | -0.776 |
| delta_Rv3717 | -0.5 | -0.176 |
| delta_Rv3811 | -0.407 | 0.431 |
| delta_Rv0954 | -0.934 | -0.655 |
| PonA1 | -0.082 | -1.654 |
| EccD1_KO | -0.082 | 1.76 |
| EspI_KO | 0.761 | 0.439 |
| PE35_KO | 0.07 | 2.333 |
| PPE68_KO | 0.586 | 1.677 |
| glycerol2 | 0.838 | 0.876 |
| lignocerate | 0.175 | -0.149 |
| oleate | 1.191 | 1.394 |
| phosphatidylcholine | 0.957 | 0.84 |
| acetate | -0.032 | -1.536 |
| glucAc | -0.039 | -1.721 |
| Rv0950ko | 1.185 | 1.595 |
| Rv1096ko | 0.492 | 0.262 |
| Rv3684ko | 1.844 | -0.406 |
| delta_otsA_trehalose | -0.662 | 0.28 |