Top 10 genes with highest correlation to Rv1302/rfe:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0110/- | (cc=0.4599) | info on Rv0110/- |
| Rv0877/- | (cc=0.4526) | info on Rv0877/- |
| Rv0047c/- | (cc=0.444) | info on Rv0047c/- |
| Rv0158/- | (cc=0.4328) | info on Rv0158/- |
| Rv2957/- | (cc=0.4311) | info on Rv2957/- |
| Rv0182c/sigG | (cc=0.4139) | info on Rv0182c/sigG |
| Rv1072/- | (cc=0.407) | info on Rv1072/- |
| Rv2617c/- | (cc=0.4012) | info on Rv2617c/- |
| Rv3853/rraA | (cc=0.3996) | info on Rv3853/rraA |
| Rv2079/- | (cc=0.3978) | info on Rv2079/- |
Correlation of Rv1302/rfe with Rv1072/-
Normalized LFCs for Rv1302/rfe:
(description and provenance of datasets)
| Rv1302/rfe | Rv1072/- | |
| Fe_supp_jason_reseq | 1.437 | 3.452 |
| low_pH_jason_reseq | 0.465 | 0.709 |
| NO_jason_reseq | 1.173 | -0.205 |
| B6_jason_reseq | 0.957 | 1.58 |
| MHCII_jason_reseq | -0.309 | 0.0 |
| Isoniazid02 | 0.453 | -2.007 |
| Rifampicin4 | -0.192 | -0.653 |
| Ethambutol3 | 0.732 | 3.263 |
| Meropenem3 | 0.502 | 0.586 |
| Vancomycin16 | 0.18 | -0.727 |
| Rv2680_day32 | 1.779 | -0.803 |
| H37Rv_KO_MarP | -0.766 | -2.718 |
| hypoxia_3wks | -0.14 | 0.0 |
| hypoxia_6wks | -0.146 | 1.451 |
| glycerol | -0.054 | 0.089 |
| cholesterol | -1.01 | -1.261 |
| AJ | 0.674 | 0.948 |
| Bibs02 | -0.968 | 0.747 |
| Bibs02c | -0.268 | 0.653 |
| BL6 | -1.086 | 2.081 |
| BL6a | 0.154 | 1.728 |
| BXD01 | 0.737 | 3.146 |
| BXD010 | 0.115 | 2.277 |
| BXD011 | 0.931 | 3.036 |
| BXD03 | -0.444 | 2.899 |
| BXD04 | 0.228 | 5.696 |
| BXD05 | 0.201 | 2.5 |
| BXD06 | 0.786 | 2.909 |
| BXD07 | 0.285 | 2.518 |
| BXD08 | 1.099 | 3.668 |
| BXD09 | 0.88 | 1.736 |
| CAST | 1.525 | 4.513 |
| CCcont | -0.791 | 2.429 |
| DS01 | -0.527 | 0.965 |
| DS02 | -0.09 | 0.821 |
| DS04 | -0.672 | 0.793 |
| DS0c | -0.671 | 0.748 |
| GP01 | 1.155 | 0.0 |
| GP02 | 0.603 | -0.166 |
| GP0c | 0.907 | -0.26 |
| NOD | 0.952 | 1.87 |
| NZO | 0.053 | 0.815 |
| PWK | 0.026 | 2.865 |
| H37Rv_KO_CtpC | 1.292 | 3.557 |
| H37Rv_KO_CtpD | 1.526 | 1.054 |
| H37Rv_KO_Rv1272 | 0.598 | 1.837 |
| H37Rv_KO_SugABC | 0.171 | 1.948 |
| H37Rv_KO_MbtN | 1.816 | 2.179 |
| Trans05 | 0.611 | 2.15 |
| macrophage_unactivated | -0.069 | -1.13 |
| IL1 | -0.332 | -1.949 |
| Rapamycin | -1.295 | -2.961 |
| Tcell | 0.404 | 1.466 |
| GMCSF | -0.615 | -1.191 |
| IFNab | -0.704 | 0.0 |
| IFNg | 0.168 | -1.756 |
| IFNg_GMCSF1 | -0.654 | -0.465 |
| Rv1432_day32 | 0.305 | -0.887 |
| Rv1565c_day32 | -0.294 | 0.401 |
| secA2_input | 1.169 | 1.079 |
| delta_Rv3594 | -0.369 | -0.846 |
| delta_Rv3717 | -0.5 | -2.079 |
| delta_Rv3811 | -0.407 | -0.717 |
| delta_Rv0954 | -0.934 | -2.135 |
| PonA1 | -0.082 | -1.272 |
| EccD1_KO | -0.082 | 1.312 |
| EspI_KO | 0.761 | 1.041 |
| PE35_KO | 0.07 | 0.306 |
| PPE68_KO | 0.586 | 0.653 |
| glycerol2 | 0.838 | -0.451 |
| lignocerate | 0.175 | -0.897 |
| oleate | 1.191 | -0.588 |
| phosphatidylcholine | 0.957 | -1.207 |
| acetate | -0.032 | -0.535 |
| glucAc | -0.039 | 0.554 |
| Rv0950ko | 1.185 | 0.28 |
| Rv1096ko | 0.492 | 2.524 |
| Rv3684ko | 1.844 | 2.6 |
| delta_otsA_trehalose | -0.662 | -1.013 |