Top 10 genes with highest correlation to Rv1302/rfe:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0110/- | (cc=0.4599) | info on Rv0110/- |
| Rv0877/- | (cc=0.4526) | info on Rv0877/- |
| Rv0047c/- | (cc=0.444) | info on Rv0047c/- |
| Rv0158/- | (cc=0.4328) | info on Rv0158/- |
| Rv2957/- | (cc=0.4311) | info on Rv2957/- |
| Rv0182c/sigG | (cc=0.4139) | info on Rv0182c/sigG |
| Rv1072/- | (cc=0.407) | info on Rv1072/- |
| Rv2617c/- | (cc=0.4012) | info on Rv2617c/- |
| Rv3853/rraA | (cc=0.3996) | info on Rv3853/rraA |
| Rv2079/- | (cc=0.3978) | info on Rv2079/- |
Correlation of Rv1302/rfe with Rv0110/-
Normalized LFCs for Rv1302/rfe:
(description and provenance of datasets)
| Rv1302/rfe | Rv0110/- | |
| Fe_supp_jason_reseq | 1.437 | -0.406 |
| low_pH_jason_reseq | 0.465 | -0.306 |
| NO_jason_reseq | 1.173 | -0.226 |
| B6_jason_reseq | 0.957 | 0.395 |
| MHCII_jason_reseq | -0.309 | 0.614 |
| Isoniazid02 | 0.453 | 0.052 |
| Rifampicin4 | -0.192 | 0.054 |
| Ethambutol3 | 0.732 | 0.731 |
| Meropenem3 | 0.502 | -0.05 |
| Vancomycin16 | 0.18 | 0.191 |
| Rv2680_day32 | 1.779 | 0.914 |
| H37Rv_KO_MarP | -0.766 | -0.085 |
| hypoxia_3wks | -0.14 | -0.562 |
| hypoxia_6wks | -0.146 | -0.351 |
| glycerol | -0.054 | 0.614 |
| cholesterol | -1.01 | 0.676 |
| AJ | 0.674 | 0.165 |
| Bibs02 | -0.968 | -0.272 |
| Bibs02c | -0.268 | 0.024 |
| BL6 | -1.086 | -0.126 |
| BL6a | 0.154 | -0.38 |
| BXD01 | 0.737 | -0.394 |
| BXD010 | 0.115 | -0.011 |
| BXD011 | 0.931 | -0.767 |
| BXD03 | -0.444 | -1.315 |
| BXD04 | 0.228 | -0.241 |
| BXD05 | 0.201 | -0.464 |
| BXD06 | 0.786 | -0.398 |
| BXD07 | 0.285 | -0.233 |
| BXD08 | 1.099 | -0.643 |
| BXD09 | 0.88 | -0.414 |
| CAST | 1.525 | 0.546 |
| CCcont | -0.791 | -0.291 |
| DS01 | -0.527 | -0.298 |
| DS02 | -0.09 | -0.186 |
| DS04 | -0.672 | 0.022 |
| DS0c | -0.671 | 0.006 |
| GP01 | 1.155 | 0.229 |
| GP02 | 0.603 | 0.311 |
| GP0c | 0.907 | -0.463 |
| NOD | 0.952 | 0.853 |
| NZO | 0.053 | 0.616 |
| PWK | 0.026 | 0.871 |
| H37Rv_KO_CtpC | 1.292 | -0.154 |
| H37Rv_KO_CtpD | 1.526 | 0.859 |
| H37Rv_KO_Rv1272 | 0.598 | 0.33 |
| H37Rv_KO_SugABC | 0.171 | 0.099 |
| H37Rv_KO_MbtN | 1.816 | 0.473 |
| Trans05 | 0.611 | -0.115 |
| macrophage_unactivated | -0.069 | -1.367 |
| IL1 | -0.332 | -0.75 |
| Rapamycin | -1.295 | -1.243 |
| Tcell | 0.404 | -1.095 |
| GMCSF | -0.615 | -1.257 |
| IFNab | -0.704 | -0.859 |
| IFNg | 0.168 | -1.392 |
| IFNg_GMCSF1 | -0.654 | -0.05 |
| Rv1432_day32 | 0.305 | 0.336 |
| Rv1565c_day32 | -0.294 | -0.223 |
| secA2_input | 1.169 | 0.861 |
| delta_Rv3594 | -0.369 | -0.795 |
| delta_Rv3717 | -0.5 | -0.774 |
| delta_Rv3811 | -0.407 | -0.259 |
| delta_Rv0954 | -0.934 | -0.84 |
| PonA1 | -0.082 | 0.284 |
| EccD1_KO | -0.082 | -0.135 |
| EspI_KO | 0.761 | -0.197 |
| PE35_KO | 0.07 | -0.228 |
| PPE68_KO | 0.586 | -0.403 |
| glycerol2 | 0.838 | 0.842 |
| lignocerate | 0.175 | 0.351 |
| oleate | 1.191 | 0.588 |
| phosphatidylcholine | 0.957 | 0.403 |
| acetate | -0.032 | -0.313 |
| glucAc | -0.039 | 0.172 |
| Rv0950ko | 1.185 | 1.07 |
| Rv1096ko | 0.492 | 1.505 |
| Rv3684ko | 1.844 | 1.497 |
| delta_otsA_trehalose | -0.662 | -2.118 |