Top 10 genes with highest correlation to Rv1253/deaD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1822/pgsA2 | (cc=0.5239) | info on Rv1822/pgsA2 |
| Rv2609c/- | (cc=0.5128) | info on Rv2609c/- |
| Rv2966c/- | (cc=0.5017) | info on Rv2966c/- |
| Rv0056/rplI | (cc=0.4939) | info on Rv0056/rplI |
| Rv1824/- | (cc=0.4852) | info on Rv1824/- |
| Rv3541c/- | (cc=0.478) | info on Rv3541c/- |
| Rv0998/- | (cc=0.4508) | info on Rv0998/- |
| Rv1158c/- | (cc=0.4492) | info on Rv1158c/- |
| Rv0007/- | (cc=0.4429) | info on Rv0007/- |
| Rv0525/- | (cc=0.4364) | info on Rv0525/- |
Correlation of Rv1253/deaD with Rv3541c/-
Normalized LFCs for Rv1253/deaD:
(description and provenance of datasets)
| Rv1253/deaD | Rv3541c/- | |
| Fe_supp_jason_reseq | 0.485 | -1.716 |
| low_pH_jason_reseq | 0.853 | 2.295 |
| NO_jason_reseq | 0.249 | -2.011 |
| B6_jason_reseq | -1.083 | -1.96 |
| MHCII_jason_reseq | 0.357 | -1.726 |
| Isoniazid02 | 1.272 | 4.528 |
| Rifampicin4 | 0.165 | 0.983 |
| Ethambutol3 | 0.437 | 4.206 |
| Meropenem3 | -0.878 | 0.335 |
| Vancomycin16 | -0.289 | 0.854 |
| Rv2680_day32 | 0.062 | -0.642 |
| H37Rv_KO_MarP | 0.689 | -0.546 |
| hypoxia_3wks | 0.243 | 0.77 |
| hypoxia_6wks | -0.223 | 0.495 |
| glycerol | 0.282 | -0.231 |
| cholesterol | 0.413 | -1.612 |
| AJ | 0.0 | -2.582 |
| Bibs02 | 0.393 | -2.035 |
| Bibs02c | -0.336 | -2.328 |
| BL6 | 0.878 | -1.392 |
| BL6a | 0.115 | -2.007 |
| BXD01 | 0.039 | -1.449 |
| BXD010 | 0.145 | -1.425 |
| BXD011 | -0.039 | -0.711 |
| BXD03 | -0.504 | -1.505 |
| BXD04 | -0.136 | -1.037 |
| BXD05 | 0.354 | -1.364 |
| BXD06 | -0.061 | -1.485 |
| BXD07 | 0.194 | -1.541 |
| BXD08 | 0.04 | -1.348 |
| BXD09 | 0.042 | -1.424 |
| CAST | -0.716 | -2.563 |
| CCcont | 0.493 | -1.662 |
| DS01 | -0.036 | -2.628 |
| DS02 | -0.276 | -2.204 |
| DS04 | 0.346 | -2.159 |
| DS0c | 0.0 | -2.413 |
| GP01 | -0.092 | -1.099 |
| GP02 | 0.025 | -0.926 |
| GP0c | -0.981 | -1.447 |
| NOD | 0.371 | -2.499 |
| NZO | -0.357 | -2.219 |
| PWK | -0.817 | -2.183 |
| H37Rv_KO_CtpC | 0.072 | -1.808 |
| H37Rv_KO_CtpD | -0.098 | -1.284 |
| H37Rv_KO_Rv1272 | 0.419 | 0.05 |
| H37Rv_KO_SugABC | -0.457 | -1.004 |
| H37Rv_KO_MbtN | -0.576 | -1.147 |
| Trans05 | 0.131 | -1.454 |
| macrophage_unactivated | 0.215 | 0.193 |
| IL1 | -0.05 | 0.181 |
| Rapamycin | 0.503 | 0.0 |
| Tcell | 0.055 | -2.333 |
| GMCSF | 0.267 | -0.169 |
| IFNab | 0.305 | 1.01 |
| IFNg | 0.045 | 1.152 |
| IFNg_GMCSF1 | 0.468 | -1.37 |
| Rv1432_day32 | -0.386 | 0.0 |
| Rv1565c_day32 | 1.556 | 0.0 |
| secA2_input | 0.585 | -0.167 |
| delta_Rv3594 | 1.592 | 1.455 |
| delta_Rv3717 | 1.432 | 0.853 |
| delta_Rv3811 | 1.801 | 0.721 |
| delta_Rv0954 | 1.154 | 1.163 |
| PonA1 | 1.377 | 2.281 |
| EccD1_KO | -0.437 | -0.243 |
| EspI_KO | -0.799 | -0.667 |
| PE35_KO | 0.578 | 1.263 |
| PPE68_KO | 0.134 | 0.442 |
| glycerol2 | -0.783 | -1.401 |
| lignocerate | -0.241 | -1.218 |
| oleate | -0.906 | -1.418 |
| phosphatidylcholine | -0.115 | -1.401 |
| acetate | 0.549 | -1.662 |
| glucAc | -0.128 | -1.034 |
| Rv0950ko | 0.0 | -0.154 |
| Rv1096ko | 0.112 | 0.941 |
| Rv3684ko | 0.521 | 1.277 |
| delta_otsA_trehalose | 0.692 | 1.032 |