Top 10 genes with highest correlation to Rv1253/deaD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1822/pgsA2 | (cc=0.5239) | info on Rv1822/pgsA2 |
| Rv2609c/- | (cc=0.5128) | info on Rv2609c/- |
| Rv2966c/- | (cc=0.5017) | info on Rv2966c/- |
| Rv0056/rplI | (cc=0.4939) | info on Rv0056/rplI |
| Rv1824/- | (cc=0.4852) | info on Rv1824/- |
| Rv3541c/- | (cc=0.478) | info on Rv3541c/- |
| Rv0998/- | (cc=0.4508) | info on Rv0998/- |
| Rv1158c/- | (cc=0.4492) | info on Rv1158c/- |
| Rv0007/- | (cc=0.4429) | info on Rv0007/- |
| Rv0525/- | (cc=0.4364) | info on Rv0525/- |
Correlation of Rv1253/deaD with Rv0056/rplI
Normalized LFCs for Rv1253/deaD:
(description and provenance of datasets)
| Rv1253/deaD | Rv0056/rplI | |
| Fe_supp_jason_reseq | 0.485 | 1.228 |
| low_pH_jason_reseq | 0.853 | -0.179 |
| NO_jason_reseq | 0.249 | -0.914 |
| B6_jason_reseq | -1.083 | -0.538 |
| MHCII_jason_reseq | 0.357 | 0.355 |
| Isoniazid02 | 1.272 | 2.183 |
| Rifampicin4 | 0.165 | 1.695 |
| Ethambutol3 | 0.437 | -0.85 |
| Meropenem3 | -0.878 | -1.842 |
| Vancomycin16 | -0.289 | 0.172 |
| Rv2680_day32 | 0.062 | 0.0 |
| H37Rv_KO_MarP | 0.689 | 1.369 |
| hypoxia_3wks | 0.243 | -1.798 |
| hypoxia_6wks | -0.223 | -1.148 |
| glycerol | 0.282 | 0.484 |
| cholesterol | 0.413 | -0.663 |
| AJ | 0.0 | -0.724 |
| Bibs02 | 0.393 | -0.062 |
| Bibs02c | -0.336 | -2.474 |
| BL6 | 0.878 | -0.949 |
| BL6a | 0.115 | -1.013 |
| BXD01 | 0.039 | -1.411 |
| BXD010 | 0.145 | -1.27 |
| BXD011 | -0.039 | 0.199 |
| BXD03 | -0.504 | 0.36 |
| BXD04 | -0.136 | -0.777 |
| BXD05 | 0.354 | -1.223 |
| BXD06 | -0.061 | 0.129 |
| BXD07 | 0.194 | -0.432 |
| BXD08 | 0.04 | -0.192 |
| BXD09 | 0.042 | -0.971 |
| CAST | -0.716 | -0.616 |
| CCcont | 0.493 | 1.082 |
| DS01 | -0.036 | -2.146 |
| DS02 | -0.276 | -2.571 |
| DS04 | 0.346 | -1.218 |
| DS0c | 0.0 | -1.97 |
| GP01 | -0.092 | -1.167 |
| GP02 | 0.025 | -0.984 |
| GP0c | -0.981 | -1.537 |
| NOD | 0.371 | -0.701 |
| NZO | -0.357 | -2.16 |
| PWK | -0.817 | -2.124 |
| H37Rv_KO_CtpC | 0.072 | -1.611 |
| H37Rv_KO_CtpD | -0.098 | -1.372 |
| H37Rv_KO_Rv1272 | 0.419 | 2.007 |
| H37Rv_KO_SugABC | -0.457 | 2.177 |
| H37Rv_KO_MbtN | -0.576 | 0.402 |
| Trans05 | 0.131 | -0.532 |
| macrophage_unactivated | 0.215 | 0.0 |
| IL1 | -0.05 | -0.546 |
| Rapamycin | 0.503 | 0.0 |
| Tcell | 0.055 | 0.186 |
| GMCSF | 0.267 | -1.7 |
| IFNab | 0.305 | -0.363 |
| IFNg | 0.045 | -0.673 |
| IFNg_GMCSF1 | 0.468 | -0.377 |
| Rv1432_day32 | -0.386 | 0.0 |
| Rv1565c_day32 | 1.556 | -0.7 |
| secA2_input | 0.585 | 2.677 |
| delta_Rv3594 | 1.592 | 2.509 |
| delta_Rv3717 | 1.432 | 2.718 |
| delta_Rv3811 | 1.801 | 1.782 |
| delta_Rv0954 | 1.154 | 2.638 |
| PonA1 | 1.377 | 0.352 |
| EccD1_KO | -0.437 | -0.135 |
| EspI_KO | -0.799 | -1.127 |
| PE35_KO | 0.578 | -1.152 |
| PPE68_KO | 0.134 | -0.934 |
| glycerol2 | -0.783 | 0.552 |
| lignocerate | -0.241 | -1.559 |
| oleate | -0.906 | -1.086 |
| phosphatidylcholine | -0.115 | -2.105 |
| acetate | 0.549 | -1.194 |
| glucAc | -0.128 | -0.695 |
| Rv0950ko | 0.0 | 0.072 |
| Rv1096ko | 0.112 | -1.583 |
| Rv3684ko | 0.521 | -0.246 |
| delta_otsA_trehalose | 0.692 | 1.163 |