Top 10 genes with highest correlation to Rv1253/deaD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1822/pgsA2 | (cc=0.5239) | info on Rv1822/pgsA2 |
| Rv2609c/- | (cc=0.5128) | info on Rv2609c/- |
| Rv2966c/- | (cc=0.5017) | info on Rv2966c/- |
| Rv0056/rplI | (cc=0.4939) | info on Rv0056/rplI |
| Rv1824/- | (cc=0.4852) | info on Rv1824/- |
| Rv3541c/- | (cc=0.478) | info on Rv3541c/- |
| Rv0998/- | (cc=0.4508) | info on Rv0998/- |
| Rv1158c/- | (cc=0.4492) | info on Rv1158c/- |
| Rv0007/- | (cc=0.4429) | info on Rv0007/- |
| Rv0525/- | (cc=0.4364) | info on Rv0525/- |
Correlation of Rv1253/deaD with Rv1158c/-
Normalized LFCs for Rv1253/deaD:
(description and provenance of datasets)
| Rv1253/deaD | Rv1158c/- | |
| Fe_supp_jason_reseq | 0.485 | 1.98 |
| low_pH_jason_reseq | 0.853 | 0.345 |
| NO_jason_reseq | 0.249 | -0.633 |
| B6_jason_reseq | -1.083 | -0.267 |
| MHCII_jason_reseq | 0.357 | 0.201 |
| Isoniazid02 | 1.272 | -0.389 |
| Rifampicin4 | 0.165 | -1.979 |
| Ethambutol3 | 0.437 | -1.154 |
| Meropenem3 | -0.878 | -2.741 |
| Vancomycin16 | -0.289 | -2.016 |
| Rv2680_day32 | 0.062 | -0.393 |
| H37Rv_KO_MarP | 0.689 | -3.159 |
| hypoxia_3wks | 0.243 | -0.339 |
| hypoxia_6wks | -0.223 | -1.685 |
| glycerol | 0.282 | 0.62 |
| cholesterol | 0.413 | 1.782 |
| AJ | 0.0 | -1.299 |
| Bibs02 | 0.393 | 0.562 |
| Bibs02c | -0.336 | 0.155 |
| BL6 | 0.878 | -1.315 |
| BL6a | 0.115 | -0.717 |
| BXD01 | 0.039 | -1.121 |
| BXD010 | 0.145 | -0.374 |
| BXD011 | -0.039 | -1.096 |
| BXD03 | -0.504 | 0.715 |
| BXD04 | -0.136 | -1.064 |
| BXD05 | 0.354 | -0.941 |
| BXD06 | -0.061 | -1.714 |
| BXD07 | 0.194 | -1.274 |
| BXD08 | 0.04 | -1.308 |
| BXD09 | 0.042 | -1.293 |
| CAST | -0.716 | -1.982 |
| CCcont | 0.493 | 0.487 |
| DS01 | -0.036 | -0.613 |
| DS02 | -0.276 | -0.564 |
| DS04 | 0.346 | -1.262 |
| DS0c | 0.0 | 0.404 |
| GP01 | -0.092 | -0.794 |
| GP02 | 0.025 | -0.934 |
| GP0c | -0.981 | -1.788 |
| NOD | 0.371 | 0.112 |
| NZO | -0.357 | -0.39 |
| PWK | -0.817 | -2.062 |
| H37Rv_KO_CtpC | 0.072 | -0.84 |
| H37Rv_KO_CtpD | -0.098 | -1.422 |
| H37Rv_KO_Rv1272 | 0.419 | 1.299 |
| H37Rv_KO_SugABC | -0.457 | -0.598 |
| H37Rv_KO_MbtN | -0.576 | 0.905 |
| Trans05 | 0.131 | -1.285 |
| macrophage_unactivated | 0.215 | -0.139 |
| IL1 | -0.05 | -1.02 |
| Rapamycin | 0.503 | -2.001 |
| Tcell | 0.055 | -0.772 |
| GMCSF | 0.267 | -0.116 |
| IFNab | 0.305 | -1.212 |
| IFNg | 0.045 | -0.241 |
| IFNg_GMCSF1 | 0.468 | -2.501 |
| Rv1432_day32 | -0.386 | 0.541 |
| Rv1565c_day32 | 1.556 | 0.0 |
| secA2_input | 0.585 | 0.825 |
| delta_Rv3594 | 1.592 | 2.928 |
| delta_Rv3717 | 1.432 | 2.445 |
| delta_Rv3811 | 1.801 | 1.176 |
| delta_Rv0954 | 1.154 | 1.765 |
| PonA1 | 1.377 | 1.392 |
| EccD1_KO | -0.437 | -0.428 |
| EspI_KO | -0.799 | -0.294 |
| PE35_KO | 0.578 | 0.28 |
| PPE68_KO | 0.134 | 1.542 |
| glycerol2 | -0.783 | -0.79 |
| lignocerate | -0.241 | -0.279 |
| oleate | -0.906 | -0.549 |
| phosphatidylcholine | -0.115 | -0.88 |
| acetate | 0.549 | 0.826 |
| glucAc | -0.128 | 0.896 |
| Rv0950ko | 0.0 | -1.083 |
| Rv1096ko | 0.112 | 0.145 |
| Rv3684ko | 0.521 | 0.74 |
| delta_otsA_trehalose | 0.692 | 0.387 |