Top 10 genes with highest correlation to Rv1178/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0712/- | (cc=0.5838) | info on Rv0712/- |
| Rv0135c/- | (cc=0.5218) | info on Rv0135c/- |
| Rv3855/ethR | (cc=0.5201) | info on Rv3855/ethR |
| Rv1592c/- | (cc=0.4935) | info on Rv1592c/- |
| Rv3068c/pgmA | (cc=0.4906) | info on Rv3068c/pgmA |
| Rv0400c/fadE7 | (cc=0.4875) | info on Rv0400c/fadE7 |
| Rv2379c/mbtF | (cc=0.4873) | info on Rv2379c/mbtF |
| Rv1020/mfd | (cc=0.478) | info on Rv1020/mfd |
| Rv2908c/- | (cc=0.4766) | info on Rv2908c/- |
| Rv0904c/accD3 | (cc=0.471) | info on Rv0904c/accD3 |
Correlation of Rv1178/- with Rv3068c/pgmA
Normalized LFCs for Rv1178/-:
(description and provenance of datasets)
| Rv1178/- | Rv3068c/pgmA | |
| Fe_supp_jason_reseq | -1.039 | -0.557 |
| low_pH_jason_reseq | 0.527 | -1.005 |
| NO_jason_reseq | -5.222 | -0.927 |
| B6_jason_reseq | -1.36 | 0.188 |
| MHCII_jason_reseq | -2.581 | -0.345 |
| Isoniazid02 | -1.072 | -0.185 |
| Rifampicin4 | -0.523 | -0.236 |
| Ethambutol3 | 1.677 | 0.1 |
| Meropenem3 | 1.154 | 0.365 |
| Vancomycin16 | -0.976 | 0.127 |
| Rv2680_day32 | -2.122 | 0.223 |
| H37Rv_KO_MarP | 3.838 | 0.058 |
| hypoxia_3wks | -4.625 | -2.731 |
| hypoxia_6wks | -2.422 | -3.408 |
| glycerol | 1.631 | -0.14 |
| cholesterol | 1.675 | 3.524 |
| AJ | -0.585 | -0.21 |
| Bibs02 | -0.294 | -0.619 |
| Bibs02c | -0.277 | -0.483 |
| BL6 | -0.53 | 0.179 |
| BL6a | 0.049 | 0.056 |
| BXD01 | -0.458 | 0.261 |
| BXD010 | -0.065 | 0.242 |
| BXD011 | -0.243 | 0.659 |
| BXD03 | -0.573 | 0.39 |
| BXD04 | 0.117 | 0.157 |
| BXD05 | -0.975 | 0.455 |
| BXD06 | -0.337 | 0.289 |
| BXD07 | 0.034 | 0.188 |
| BXD08 | -0.422 | -0.127 |
| BXD09 | -0.494 | 0.072 |
| CAST | -0.654 | -0.27 |
| CCcont | 1.517 | -0.128 |
| DS01 | -0.83 | -0.152 |
| DS02 | -0.288 | 0.082 |
| DS04 | 0.0 | 0.495 |
| DS0c | -1.268 | -0.338 |
| GP01 | -0.382 | 1.364 |
| GP02 | -0.839 | 0.758 |
| GP0c | -0.551 | 0.159 |
| NOD | -0.789 | -0.898 |
| NZO | 0.405 | -0.244 |
| PWK | -1.326 | -0.057 |
| H37Rv_KO_CtpC | 0.329 | 0.069 |
| H37Rv_KO_CtpD | 0.061 | -0.262 |
| H37Rv_KO_Rv1272 | -0.109 | -0.142 |
| H37Rv_KO_SugABC | 0.138 | 0.48 |
| H37Rv_KO_MbtN | -0.558 | -0.62 |
| Trans05 | 0.0 | -0.416 |
| macrophage_unactivated | 0.609 | 0.202 |
| IL1 | 0.463 | -0.288 |
| Rapamycin | 1.114 | -0.347 |
| Tcell | 0.388 | -0.094 |
| GMCSF | -1.436 | 0.349 |
| IFNab | -1.297 | -0.088 |
| IFNg | -1.0 | -0.388 |
| IFNg_GMCSF1 | 0.49 | 0.069 |
| Rv1432_day32 | -1.602 | 0.576 |
| Rv1565c_day32 | -3.533 | -0.444 |
| secA2_input | -0.205 | 0.095 |
| delta_Rv3594 | -0.199 | -0.075 |
| delta_Rv3717 | -1.602 | -0.43 |
| delta_Rv3811 | -1.344 | -0.65 |
| delta_Rv0954 | 2.212 | -0.208 |
| PonA1 | 1.711 | 0.167 |
| EccD1_KO | 0.47 | 0.431 |
| EspI_KO | 0.485 | 0.374 |
| PE35_KO | 0.723 | -0.257 |
| PPE68_KO | 0.873 | -0.55 |
| glycerol2 | -1.789 | 0.269 |
| lignocerate | -2.153 | -2.53 |
| oleate | -2.105 | -2.101 |
| phosphatidylcholine | -2.899 | -3.003 |
| acetate | -0.888 | 0.229 |
| glucAc | -0.754 | -0.089 |
| Rv0950ko | 3.745 | 0.419 |
| Rv1096ko | 2.569 | 0.709 |
| Rv3684ko | 3.871 | 0.563 |
| delta_otsA_trehalose | 0.415 | 0.3 |