TnSeqCorr

Top 10 genes with highest correlation to Rv1085c/-:

update plotcorrelationlink to info on gene
Rv3230c/- (cc=0.5478) info on Rv3230c/-
Rv2081c/- (cc=0.5172) info on Rv2081c/-
Rv0346c/ansP2 (cc=0.4684) info on Rv0346c/ansP2
Rv1538c/ansA (cc=0.4579) info on Rv1538c/ansA
Rv1129c/- (cc=0.4292) info on Rv1129c/-
Rv0396/- (cc=0.4046) info on Rv0396/-
Rv3135/PPE50 (cc=0.3991) info on Rv3135/PPE50
Rv3229c/desA3 (cc=0.3871) info on Rv3229c/desA3
Rv0914c/- (cc=0.3809) info on Rv0914c/-
Rv0837c/- (cc=0.3752) info on Rv0837c/-

Correlation of Rv1085c/- with Rv3230c/-

Normalized LFCs for Rv1085c/-:
(description and provenance of datasets)
Rv1085c/-Rv3230c/-
Fe_supp_jason_reseq

0.923

1.118

low_pH_jason_reseq

-1.563

-2.28

NO_jason_reseq

-0.761

-0.845

B6_jason_reseq

-0.601

0.018

MHCII_jason_reseq

0.491

0.613

Isoniazid02

-0.941

0.042

Rifampicin4

-0.249

0.658

Ethambutol3

-0.626

0.295

Meropenem3

2.199

-0.351

Vancomycin16

0.443

0.838

Rv2680_day32

-0.584

-0.428

H37Rv_KO_MarP

-0.148

-1.544

hypoxia_3wks

0.303

1.22

hypoxia_6wks

-0.382

-0.639

glycerol

-6.0

-4.991

cholesterol

-4.689

-2.671

AJ

-0.435

-0.822

Bibs02

-1.98

-2.383

Bibs02c

-0.606

-2.902

BL6

-0.777

-0.393

BL6a

-1.161

-1.967

BXD01

-1.461

-1.526

BXD010

-0.621

-0.935

BXD011

-0.975

-0.42

BXD03

-0.478

-1.709

BXD04

-1.657

-1.516

BXD05

-1.002

-0.7

BXD06

-1.05

-1.326

BXD07

-0.802

-1.482

BXD08

-1.307

-1.17

BXD09

-1.057

-1.416

CAST

-0.667

-0.911

CCcont

0.05

-0.357

DS01

-0.974

-2.046

DS02

-0.896

-1.465

DS04

-0.659

-0.238

DS0c

0.618

-1.851

GP01

-2.937

-1.483

GP02

-2.827

-1.429

GP0c

-3.004

-1.832

NOD

-0.949

0.0

NZO

-1.169

-0.433

PWK

-0.158

-0.034

H37Rv_KO_CtpC

-0.462

-2.325

H37Rv_KO_CtpD

-2.131

-0.35

H37Rv_KO_Rv1272

0.296

-0.306

H37Rv_KO_SugABC

-1.28

0.54

H37Rv_KO_MbtN

-0.206

0.386

Trans05

0.658

-1.065

macrophage_unactivated

0.578

-0.054

IL1

-0.478

0.3

Rapamycin

-1.12

-1.587

Tcell

-1.049

-1.766

GMCSF

-0.425

-0.541

IFNab

-0.348

-0.384

IFNg

0.021

0.719

IFNg_GMCSF1

0.207

-0.399

Rv1432_day32

1.215

0.226

Rv1565c_day32

-1.84

-0.297

secA2_input

-0.557

-0.833

delta_Rv3594

0.592

-0.135

delta_Rv3717

0.068

-0.696

delta_Rv3811

1.094

-0.382

delta_Rv0954

0.252

0.742

PonA1

0.743

-0.076

EccD1_KO

-0.079

-0.076

EspI_KO

-0.727

-0.827

PE35_KO

-0.662

-1.747

PPE68_KO

-0.138

-0.442

glycerol2

-4.384

0.0

lignocerate

-2.593

-1.011

oleate

0.784

-0.425

phosphatidylcholine

0.478

0.399

acetate

0.707

-1.25

glucAc

0.718

-1.735

Rv0950ko

0.772

-0.401

Rv1096ko

1.276

-0.217

Rv3684ko

1.782

0.783

delta_otsA_trehalose

-1.098

0.564