Top 10 genes with highest correlation to Rv1057/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0441c/- | (cc=0.622) | info on Rv0441c/- |
| Rv0870c/- | (cc=0.5734) | info on Rv0870c/- |
| Rv0530/- | (cc=0.5674) | info on Rv0530/- |
| Rv1376/- | (cc=0.5492) | info on Rv1376/- |
| Rv0754/PE_PGRS11 | (cc=0.5169) | info on Rv0754/PE_PGRS11 |
| Rv1838c/vapC13 | (cc=0.5168) | info on Rv1838c/vapC13 |
| Rv2237A/- | (cc=0.5155) | info on Rv2237A/- |
| Rv3196/- | (cc=0.5108) | info on Rv3196/- |
| Rv1403c/- | (cc=0.503) | info on Rv1403c/- |
| Rv2378c/mbtG | (cc=0.5023) | info on Rv2378c/mbtG |
Correlation of Rv1057/- with Rv2378c/mbtG
Normalized LFCs for Rv1057/-:
(description and provenance of datasets)
| Rv1057/- | Rv2378c/mbtG | |
| Fe_supp_jason_reseq | -0.014 | 1.645 |
| low_pH_jason_reseq | 0.186 | 0.137 |
| NO_jason_reseq | 0.423 | -0.735 |
| B6_jason_reseq | 0.318 | -0.85 |
| MHCII_jason_reseq | 0.133 | -0.614 |
| Isoniazid02 | 0.026 | 0.764 |
| Rifampicin4 | -0.777 | -0.712 |
| Ethambutol3 | 1.098 | 2.112 |
| Meropenem3 | -0.067 | -0.587 |
| Vancomycin16 | -0.424 | 0.385 |
| Rv2680_day32 | -1.83 | -3.19 |
| H37Rv_KO_MarP | 0.752 | 1.565 |
| hypoxia_3wks | -0.941 | -2.46 |
| hypoxia_6wks | -0.382 | -1.718 |
| glycerol | 0.161 | 1.862 |
| cholesterol | 0.434 | 0.435 |
| AJ | -0.049 | -0.983 |
| Bibs02 | 0.419 | -1.673 |
| Bibs02c | -0.062 | -1.707 |
| BL6 | -0.023 | 0.053 |
| BL6a | -0.281 | -0.377 |
| BXD01 | -0.522 | -1.062 |
| BXD010 | -0.647 | -0.179 |
| BXD011 | -0.057 | -0.923 |
| BXD03 | -0.429 | -1.237 |
| BXD04 | -0.154 | 0.559 |
| BXD05 | -0.879 | 0.314 |
| BXD06 | -0.575 | 0.111 |
| BXD07 | -0.423 | -0.264 |
| BXD08 | -0.162 | -0.4 |
| BXD09 | -0.43 | -0.901 |
| CAST | 0.287 | 0.192 |
| CCcont | -0.427 | 0.399 |
| DS01 | 0.027 | 2.779 |
| DS02 | 0.038 | 1.479 |
| DS04 | -0.006 | 0.932 |
| DS0c | 0.167 | 0.181 |
| GP01 | 0.624 | -0.903 |
| GP02 | 0.614 | -0.761 |
| GP0c | -0.275 | -1.19 |
| NOD | 0.129 | -0.809 |
| NZO | -0.121 | -0.718 |
| PWK | -0.053 | -0.706 |
| H37Rv_KO_CtpC | -0.51 | -0.585 |
| H37Rv_KO_CtpD | 0.223 | -0.456 |
| H37Rv_KO_Rv1272 | -0.795 | -0.508 |
| H37Rv_KO_SugABC | -0.825 | -0.42 |
| H37Rv_KO_MbtN | -0.332 | -0.747 |
| Trans05 | -0.736 | -1.066 |
| macrophage_unactivated | 0.35 | -0.193 |
| IL1 | 0.062 | 1.231 |
| Rapamycin | 0.488 | -0.592 |
| Tcell | -0.485 | 0.375 |
| GMCSF | 0.356 | -0.694 |
| IFNab | -0.33 | 0.0 |
| IFNg | -0.086 | 0.454 |
| IFNg_GMCSF1 | 0.066 | 2.083 |
| Rv1432_day32 | 0.521 | -1.027 |
| Rv1565c_day32 | 0.118 | 1.93 |
| secA2_input | 0.41 | 1.758 |
| delta_Rv3594 | -0.109 | -1.172 |
| delta_Rv3717 | -0.31 | 0.413 |
| delta_Rv3811 | -0.644 | -1.709 |
| delta_Rv0954 | 0.271 | 0.509 |
| PonA1 | 0.105 | 0.945 |
| EccD1_KO | 0.585 | 1.684 |
| EspI_KO | 0.838 | 2.031 |
| PE35_KO | 0.163 | 2.444 |
| PPE68_KO | 0.336 | 3.248 |
| glycerol2 | 0.645 | 1.073 |
| lignocerate | 1.097 | 1.464 |
| oleate | -0.265 | 0.373 |
| phosphatidylcholine | 0.873 | 1.073 |
| acetate | 0.397 | 1.127 |
| glucAc | 0.369 | 1.825 |
| Rv0950ko | -0.045 | 1.58 |
| Rv1096ko | 0.0 | 0.347 |
| Rv3684ko | 0.295 | 0.468 |
| delta_otsA_trehalose | 1.013 | 0.492 |