Top 10 genes with highest correlation to Rv1057/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0441c/- | (cc=0.622) | info on Rv0441c/- |
| Rv0870c/- | (cc=0.5734) | info on Rv0870c/- |
| Rv0530/- | (cc=0.5674) | info on Rv0530/- |
| Rv1376/- | (cc=0.5492) | info on Rv1376/- |
| Rv0754/PE_PGRS11 | (cc=0.5169) | info on Rv0754/PE_PGRS11 |
| Rv1838c/vapC13 | (cc=0.5168) | info on Rv1838c/vapC13 |
| Rv2237A/- | (cc=0.5155) | info on Rv2237A/- |
| Rv3196/- | (cc=0.5108) | info on Rv3196/- |
| Rv1403c/- | (cc=0.503) | info on Rv1403c/- |
| Rv2378c/mbtG | (cc=0.5023) | info on Rv2378c/mbtG |
Correlation of Rv1057/- with Rv0754/PE_PGRS11
Normalized LFCs for Rv1057/-:
(description and provenance of datasets)
| Rv1057/- | Rv0754/PE_PGRS11 | |
| Fe_supp_jason_reseq | -0.014 | -0.499 |
| low_pH_jason_reseq | 0.186 | -0.475 |
| NO_jason_reseq | 0.423 | 0.068 |
| B6_jason_reseq | 0.318 | 0.63 |
| MHCII_jason_reseq | 0.133 | -0.045 |
| Isoniazid02 | 0.026 | -0.874 |
| Rifampicin4 | -0.777 | -0.43 |
| Ethambutol3 | 1.098 | -0.28 |
| Meropenem3 | -0.067 | -0.551 |
| Vancomycin16 | -0.424 | -0.822 |
| Rv2680_day32 | -1.83 | -0.473 |
| H37Rv_KO_MarP | 0.752 | 0.509 |
| hypoxia_3wks | -0.941 | 0.0 |
| hypoxia_6wks | -0.382 | 0.194 |
| glycerol | 0.161 | 0.758 |
| cholesterol | 0.434 | -0.019 |
| AJ | -0.049 | 0.03 |
| Bibs02 | 0.419 | 0.229 |
| Bibs02c | -0.062 | -0.13 |
| BL6 | -0.023 | -0.248 |
| BL6a | -0.281 | -0.413 |
| BXD01 | -0.522 | -0.299 |
| BXD010 | -0.647 | -0.797 |
| BXD011 | -0.057 | -0.314 |
| BXD03 | -0.429 | -0.663 |
| BXD04 | -0.154 | -0.548 |
| BXD05 | -0.879 | -0.717 |
| BXD06 | -0.575 | -0.197 |
| BXD07 | -0.423 | -0.747 |
| BXD08 | -0.162 | -0.372 |
| BXD09 | -0.43 | -0.769 |
| CAST | 0.287 | 0.19 |
| CCcont | -0.427 | -0.613 |
| DS01 | 0.027 | 0.06 |
| DS02 | 0.038 | 0.019 |
| DS04 | -0.006 | 0.545 |
| DS0c | 0.167 | -0.407 |
| GP01 | 0.624 | -0.098 |
| GP02 | 0.614 | 0.579 |
| GP0c | -0.275 | -0.673 |
| NOD | 0.129 | 0.085 |
| NZO | -0.121 | 0.481 |
| PWK | -0.053 | 0.115 |
| H37Rv_KO_CtpC | -0.51 | -0.064 |
| H37Rv_KO_CtpD | 0.223 | -0.488 |
| H37Rv_KO_Rv1272 | -0.795 | -0.043 |
| H37Rv_KO_SugABC | -0.825 | -0.413 |
| H37Rv_KO_MbtN | -0.332 | -0.276 |
| Trans05 | -0.736 | -0.314 |
| macrophage_unactivated | 0.35 | 0.259 |
| IL1 | 0.062 | 0.0 |
| Rapamycin | 0.488 | -0.267 |
| Tcell | -0.485 | 0.055 |
| GMCSF | 0.356 | -0.277 |
| IFNab | -0.33 | -0.103 |
| IFNg | -0.086 | -0.69 |
| IFNg_GMCSF1 | 0.066 | -0.163 |
| Rv1432_day32 | 0.521 | 0.566 |
| Rv1565c_day32 | 0.118 | 0.681 |
| secA2_input | 0.41 | 0.557 |
| delta_Rv3594 | -0.109 | -0.04 |
| delta_Rv3717 | -0.31 | -0.21 |
| delta_Rv3811 | -0.644 | 0.138 |
| delta_Rv0954 | 0.271 | 0.012 |
| PonA1 | 0.105 | 0.261 |
| EccD1_KO | 0.585 | 0.48 |
| EspI_KO | 0.838 | 0.0 |
| PE35_KO | 0.163 | 0.128 |
| PPE68_KO | 0.336 | 0.307 |
| glycerol2 | 0.645 | 0.972 |
| lignocerate | 1.097 | 0.704 |
| oleate | -0.265 | 0.992 |
| phosphatidylcholine | 0.873 | 1.007 |
| acetate | 0.397 | 0.066 |
| glucAc | 0.369 | 0.081 |
| Rv0950ko | -0.045 | -0.576 |
| Rv1096ko | 0.0 | -0.066 |
| Rv3684ko | 0.295 | -0.678 |
| delta_otsA_trehalose | 1.013 | 1.322 |