Top 10 genes with highest correlation to Rv1057/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0441c/- | (cc=0.622) | info on Rv0441c/- |
| Rv0870c/- | (cc=0.5734) | info on Rv0870c/- |
| Rv0530/- | (cc=0.5674) | info on Rv0530/- |
| Rv1376/- | (cc=0.5492) | info on Rv1376/- |
| Rv0754/PE_PGRS11 | (cc=0.5169) | info on Rv0754/PE_PGRS11 |
| Rv1838c/vapC13 | (cc=0.5168) | info on Rv1838c/vapC13 |
| Rv2237A/- | (cc=0.5155) | info on Rv2237A/- |
| Rv3196/- | (cc=0.5108) | info on Rv3196/- |
| Rv1403c/- | (cc=0.503) | info on Rv1403c/- |
| Rv2378c/mbtG | (cc=0.5023) | info on Rv2378c/mbtG |
Correlation of Rv1057/- with Rv1376/-
Normalized LFCs for Rv1057/-:
(description and provenance of datasets)
| Rv1057/- | Rv1376/- | |
| Fe_supp_jason_reseq | -0.014 | -0.511 |
| low_pH_jason_reseq | 0.186 | 1.705 |
| NO_jason_reseq | 0.423 | -0.192 |
| B6_jason_reseq | 0.318 | 0.374 |
| MHCII_jason_reseq | 0.133 | 0.866 |
| Isoniazid02 | 0.026 | 0.541 |
| Rifampicin4 | -0.777 | 0.796 |
| Ethambutol3 | 1.098 | 0.564 |
| Meropenem3 | -0.067 | -0.071 |
| Vancomycin16 | -0.424 | 0.061 |
| Rv2680_day32 | -1.83 | -0.323 |
| H37Rv_KO_MarP | 0.752 | 0.27 |
| hypoxia_3wks | -0.941 | 0.08 |
| hypoxia_6wks | -0.382 | -0.086 |
| glycerol | 0.161 | 0.187 |
| cholesterol | 0.434 | -0.353 |
| AJ | -0.049 | 0.484 |
| Bibs02 | 0.419 | -0.682 |
| Bibs02c | -0.062 | 0.133 |
| BL6 | -0.023 | -0.251 |
| BL6a | -0.281 | -0.105 |
| BXD01 | -0.522 | -0.904 |
| BXD010 | -0.647 | -0.79 |
| BXD011 | -0.057 | -0.149 |
| BXD03 | -0.429 | -0.595 |
| BXD04 | -0.154 | -0.55 |
| BXD05 | -0.879 | -0.57 |
| BXD06 | -0.575 | -0.512 |
| BXD07 | -0.423 | -0.97 |
| BXD08 | -0.162 | -0.731 |
| BXD09 | -0.43 | -0.618 |
| CAST | 0.287 | 0.402 |
| CCcont | -0.427 | 0.119 |
| DS01 | 0.027 | -0.368 |
| DS02 | 0.038 | -0.022 |
| DS04 | -0.006 | 0.0 |
| DS0c | 0.167 | -0.278 |
| GP01 | 0.624 | 0.639 |
| GP02 | 0.614 | 1.11 |
| GP0c | -0.275 | 0.169 |
| NOD | 0.129 | 0.438 |
| NZO | -0.121 | -0.503 |
| PWK | -0.053 | -0.213 |
| H37Rv_KO_CtpC | -0.51 | -1.299 |
| H37Rv_KO_CtpD | 0.223 | 0.172 |
| H37Rv_KO_Rv1272 | -0.795 | -0.562 |
| H37Rv_KO_SugABC | -0.825 | -0.799 |
| H37Rv_KO_MbtN | -0.332 | -0.14 |
| Trans05 | -0.736 | -0.889 |
| macrophage_unactivated | 0.35 | -0.303 |
| IL1 | 0.062 | -0.05 |
| Rapamycin | 0.488 | -0.018 |
| Tcell | -0.485 | -0.192 |
| GMCSF | 0.356 | -0.061 |
| IFNab | -0.33 | -0.599 |
| IFNg | -0.086 | 0.195 |
| IFNg_GMCSF1 | 0.066 | -0.053 |
| Rv1432_day32 | 0.521 | 0.189 |
| Rv1565c_day32 | 0.118 | 0.104 |
| secA2_input | 0.41 | 0.756 |
| delta_Rv3594 | -0.109 | -0.012 |
| delta_Rv3717 | -0.31 | -0.083 |
| delta_Rv3811 | -0.644 | -0.589 |
| delta_Rv0954 | 0.271 | 0.141 |
| PonA1 | 0.105 | 0.91 |
| EccD1_KO | 0.585 | 0.687 |
| EspI_KO | 0.838 | 0.285 |
| PE35_KO | 0.163 | 0.292 |
| PPE68_KO | 0.336 | 0.448 |
| glycerol2 | 0.645 | 0.374 |
| lignocerate | 1.097 | 0.855 |
| oleate | -0.265 | 0.305 |
| phosphatidylcholine | 0.873 | 0.689 |
| acetate | 0.397 | 0.56 |
| glucAc | 0.369 | 0.686 |
| Rv0950ko | -0.045 | 0.329 |
| Rv1096ko | 0.0 | -0.25 |
| Rv3684ko | 0.295 | -0.416 |
| delta_otsA_trehalose | 1.013 | 0.594 |