TnSeqCorr

Top 10 genes with highest correlation to Rv1044/-:

update plotcorrelationlink to info on gene
Rv2474c/- (cc=0.529) info on Rv2474c/-
Rv2841c/nusA (cc=0.5161) info on Rv2841c/nusA
Rv0079/- (cc=0.5054) info on Rv0079/-
Rv1160/mutT2 (cc=0.4913) info on Rv1160/mutT2
Rv0316/- (cc=0.4726) info on Rv0316/-
Rv3758c/proV (cc=0.4633) info on Rv3758c/proV
Rv1763/- (cc=0.4622) info on Rv1763/-
Rv0228/- (cc=0.4589) info on Rv0228/-
Rv1676/- (cc=0.4588) info on Rv1676/-
Rv0984/moaB2 (cc=0.4538) info on Rv0984/moaB2

Correlation of Rv1044/- with Rv0984/moaB2

Normalized LFCs for Rv1044/-:
(description and provenance of datasets)
Rv1044/-Rv0984/moaB2
Fe_supp_jason_reseq

1.163

2.846

low_pH_jason_reseq

-0.768

-0.428

NO_jason_reseq

-0.116

0.0

B6_jason_reseq

-1.759

1.747

MHCII_jason_reseq

0.498

1.01

Isoniazid02

0.0

0.298

Rifampicin4

0.558

-0.152

Ethambutol3

0.066

-0.098

Meropenem3

0.065

0.41

Vancomycin16

0.796

-0.021

Rv2680_day32

0.0

1.149

H37Rv_KO_MarP

-0.272

0.793

hypoxia_3wks

0.0

0.411

hypoxia_6wks

0.274

-0.071

glycerol

-1.583

0.503

cholesterol

-0.492

-0.114

AJ

-0.983

-0.044

Bibs02

1.403

0.181

Bibs02c

-0.797

-0.52

BL6

-0.53

-0.782

BL6a

-0.927

-0.903

BXD01

-0.343

-0.844

BXD010

-1.586

-1.868

BXD011

-0.782

-1.407

BXD03

-0.762

-1.531

BXD04

-0.42

-1.169

BXD05

0.283

-1.475

BXD06

-0.892

-1.463

BXD07

-1.085

-1.256

BXD08

-1.127

-1.544

BXD09

-0.596

-1.296

CAST

-1.185

-0.15

CCcont

-0.393

-1.719

DS01

-1.215

-0.352

DS02

-0.922

0.113

DS04

0.056

0.114

DS0c

0.556

0.203

GP01

-0.462

-1.833

GP02

-0.885

0.673

GP0c

0.391

-1.831

NOD

-1.051

0.104

NZO

-1.026

-0.998

PWK

0.364

-0.558

H37Rv_KO_CtpC

-1.486

-0.693

H37Rv_KO_CtpD

1.889

-3.93

H37Rv_KO_Rv1272

-1.29

-0.317

H37Rv_KO_SugABC

-0.224

-2.356

H37Rv_KO_MbtN

1.486

0.035

Trans05

0.038

-1.69

macrophage_unactivated

0.398

-5.3

IL1

-2.251

-4.663

Rapamycin

-2.001

-3.652

Tcell

-3.05

-4.493

GMCSF

-2.64

-3.44

IFNab

-1.817

-5.424

IFNg

-1.743

-4.525

IFNg_GMCSF1

-2.564

-5.455

Rv1432_day32

-0.748

0.107

Rv1565c_day32

-0.218

-1.003

secA2_input

0.398

0.98

delta_Rv3594

0.0

1.355

delta_Rv3717

-0.308

-1.133

delta_Rv3811

0.532

0.385

delta_Rv0954

1.009

1.774

PonA1

0.413

0.871

EccD1_KO

-0.132

0.339

EspI_KO

-0.348

1.743

PE35_KO

-0.481

0.823

PPE68_KO

-0.39

1.83

glycerol2

-0.27

0.811

lignocerate

-0.113

-0.329

oleate

-0.274

-0.216

phosphatidylcholine

-0.42

0.494

acetate

0.283

-0.574

glucAc

0.333

-1.251

Rv0950ko

0.528

-0.654

Rv1096ko

0.271

-1.372

Rv3684ko

0.707

-0.321

delta_otsA_trehalose

0.599

0.407