Top 10 genes with highest correlation to Rv1042c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1149/- | (cc=0.8949) | info on Rv1149/- |
| Rv1041c/- | (cc=0.6823) | info on Rv1041c/- |
| Rv1135c/PPE16 | (cc=0.63) | info on Rv1135c/PPE16 |
| Rv3144c/PPE52 | (cc=0.4829) | info on Rv3144c/PPE52 |
| Rv0540/- | (cc=0.4504) | info on Rv0540/- |
| Rv0578c/PE_PGRS7 | (cc=0.4456) | info on Rv0578c/PE_PGRS7 |
| Rv0546c/- | (cc=0.4453) | info on Rv0546c/- |
| Rv1071c/echA9 | (cc=0.4413) | info on Rv1071c/echA9 |
| Rv0621/- | (cc=0.4403) | info on Rv0621/- |
| Rv0755c/PPE12 | (cc=0.4396) | info on Rv0755c/PPE12 |
Correlation of Rv1042c/- with Rv1135c/PPE16
Normalized LFCs for Rv1042c/-:
(description and provenance of datasets)
| Rv1042c/- | Rv1135c/PPE16 | |
| Fe_supp_jason_reseq | -1.46 | -0.655 |
| low_pH_jason_reseq | -1.064 | -1.094 |
| NO_jason_reseq | -0.78 | -0.551 |
| B6_jason_reseq | 0.796 | -0.13 |
| MHCII_jason_reseq | 0.763 | 0.093 |
| Isoniazid02 | 0.451 | 0.362 |
| Rifampicin4 | 1.914 | 1.075 |
| Ethambutol3 | 0.814 | 0.67 |
| Meropenem3 | 0.994 | 0.718 |
| Vancomycin16 | 1.292 | 0.846 |
| Rv2680_day32 | -0.571 | -0.104 |
| H37Rv_KO_MarP | -0.032 | -0.344 |
| hypoxia_3wks | 1.049 | -0.65 |
| hypoxia_6wks | 1.33 | -0.443 |
| glycerol | 0.168 | 0.151 |
| cholesterol | 0.131 | 0.101 |
| AJ | 0.734 | 0.402 |
| Bibs02 | 0.372 | 0.646 |
| Bibs02c | 1.84 | 0.382 |
| BL6 | -0.98 | -0.562 |
| BL6a | 1.413 | -0.37 |
| BXD01 | -0.009 | -0.218 |
| BXD010 | 0.413 | -0.642 |
| BXD011 | -0.323 | -0.181 |
| BXD03 | 0.618 | -0.455 |
| BXD04 | -0.744 | -0.192 |
| BXD05 | 0.39 | 0.289 |
| BXD06 | 0.075 | -0.469 |
| BXD07 | 0.171 | -0.111 |
| BXD08 | -0.8 | -0.267 |
| BXD09 | 0.32 | -0.472 |
| CAST | 0.692 | -0.103 |
| CCcont | -1.018 | -1.193 |
| DS01 | 1.09 | 0.26 |
| DS02 | 0.922 | 0.365 |
| DS04 | 0.188 | 0.916 |
| DS0c | 0.592 | 0.456 |
| GP01 | -2.405 | -1.134 |
| GP02 | -0.64 | 0.087 |
| GP0c | -0.317 | -0.64 |
| NOD | 1.866 | 0.202 |
| NZO | 0.058 | -0.373 |
| PWK | 0.915 | 0.429 |
| H37Rv_KO_CtpC | 3.218 | 0.187 |
| H37Rv_KO_CtpD | 1.339 | 0.473 |
| H37Rv_KO_Rv1272 | 0.01 | 0.315 |
| H37Rv_KO_SugABC | -1.494 | -0.288 |
| H37Rv_KO_MbtN | 0.877 | 0.098 |
| Trans05 | 0.698 | 0.446 |
| macrophage_unactivated | -1.932 | -0.48 |
| IL1 | -0.033 | -1.017 |
| Rapamycin | 0.034 | -0.644 |
| Tcell | -0.551 | -0.111 |
| GMCSF | -0.383 | -0.528 |
| IFNab | -0.692 | -0.91 |
| IFNg | -1.187 | -1.28 |
| IFNg_GMCSF1 | -0.962 | -0.305 |
| Rv1432_day32 | 0.868 | 0.343 |
| Rv1565c_day32 | 0.485 | 0.253 |
| secA2_input | 1.481 | -0.437 |
| delta_Rv3594 | 0.239 | 0.395 |
| delta_Rv3717 | 1.402 | 0.257 |
| delta_Rv3811 | 0.824 | 0.031 |
| delta_Rv0954 | 0.899 | 0.72 |
| PonA1 | -0.431 | 0.128 |
| EccD1_KO | 1.095 | 0.658 |
| EspI_KO | 1.315 | 0.456 |
| PE35_KO | 1.423 | 0.939 |
| PPE68_KO | 1.689 | 0.761 |
| glycerol2 | -0.495 | -0.566 |
| lignocerate | -0.631 | -0.252 |
| oleate | -0.038 | -0.313 |
| phosphatidylcholine | -0.242 | -0.115 |
| acetate | 0.0 | -0.411 |
| glucAc | 0.082 | -0.255 |
| Rv0950ko | 0.597 | -0.211 |
| Rv1096ko | 1.252 | -0.211 |
| Rv3684ko | -0.239 | -0.783 |
| delta_otsA_trehalose | -1.073 | -0.926 |