Top 10 genes with highest correlation to Rv1042c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1149/- | (cc=0.8949) | info on Rv1149/- |
| Rv1041c/- | (cc=0.6823) | info on Rv1041c/- |
| Rv1135c/PPE16 | (cc=0.63) | info on Rv1135c/PPE16 |
| Rv3144c/PPE52 | (cc=0.4829) | info on Rv3144c/PPE52 |
| Rv0540/- | (cc=0.4504) | info on Rv0540/- |
| Rv0578c/PE_PGRS7 | (cc=0.4456) | info on Rv0578c/PE_PGRS7 |
| Rv0546c/- | (cc=0.4453) | info on Rv0546c/- |
| Rv1071c/echA9 | (cc=0.4413) | info on Rv1071c/echA9 |
| Rv0621/- | (cc=0.4403) | info on Rv0621/- |
| Rv0755c/PPE12 | (cc=0.4396) | info on Rv0755c/PPE12 |
Correlation of Rv1042c/- with Rv0546c/-
Normalized LFCs for Rv1042c/-:
(description and provenance of datasets)
| Rv1042c/- | Rv0546c/- | |
| Fe_supp_jason_reseq | -1.46 | -0.085 |
| low_pH_jason_reseq | -1.064 | -1.691 |
| NO_jason_reseq | -0.78 | -0.318 |
| B6_jason_reseq | 0.796 | 0.345 |
| MHCII_jason_reseq | 0.763 | 0.193 |
| Isoniazid02 | 0.451 | 0.016 |
| Rifampicin4 | 1.914 | 1.614 |
| Ethambutol3 | 0.814 | 0.377 |
| Meropenem3 | 0.994 | 0.714 |
| Vancomycin16 | 1.292 | 1.244 |
| Rv2680_day32 | -0.571 | -0.721 |
| H37Rv_KO_MarP | -0.032 | -0.158 |
| hypoxia_3wks | 1.049 | 1.998 |
| hypoxia_6wks | 1.33 | 1.422 |
| glycerol | 0.168 | 1.352 |
| cholesterol | 0.131 | 1.157 |
| AJ | 0.734 | -0.012 |
| Bibs02 | 0.372 | 0.307 |
| Bibs02c | 1.84 | 1.084 |
| BL6 | -0.98 | -0.634 |
| BL6a | 1.413 | 0.673 |
| BXD01 | -0.009 | -0.339 |
| BXD010 | 0.413 | -0.396 |
| BXD011 | -0.323 | 1.404 |
| BXD03 | 0.618 | -0.211 |
| BXD04 | -0.744 | 0.295 |
| BXD05 | 0.39 | 0.371 |
| BXD06 | 0.075 | -0.073 |
| BXD07 | 0.171 | -0.576 |
| BXD08 | -0.8 | -0.374 |
| BXD09 | 0.32 | -0.677 |
| CAST | 0.692 | 0.279 |
| CCcont | -1.018 | -0.251 |
| DS01 | 1.09 | -0.31 |
| DS02 | 0.922 | 0.698 |
| DS04 | 0.188 | -0.614 |
| DS0c | 0.592 | -0.011 |
| GP01 | -2.405 | 0.293 |
| GP02 | -0.64 | 0.027 |
| GP0c | -0.317 | -0.178 |
| NOD | 1.866 | 0.693 |
| NZO | 0.058 | -0.646 |
| PWK | 0.915 | 0.719 |
| H37Rv_KO_CtpC | 3.218 | -1.051 |
| H37Rv_KO_CtpD | 1.339 | 0.207 |
| H37Rv_KO_Rv1272 | 0.01 | -0.844 |
| H37Rv_KO_SugABC | -1.494 | -0.412 |
| H37Rv_KO_MbtN | 0.877 | 1.01 |
| Trans05 | 0.698 | -0.709 |
| macrophage_unactivated | -1.932 | -1.376 |
| IL1 | -0.033 | -1.688 |
| Rapamycin | 0.034 | -1.252 |
| Tcell | -0.551 | -0.736 |
| GMCSF | -0.383 | 0.026 |
| IFNab | -0.692 | 0.644 |
| IFNg | -1.187 | -0.77 |
| IFNg_GMCSF1 | -0.962 | -2.093 |
| Rv1432_day32 | 0.868 | 1.572 |
| Rv1565c_day32 | 0.485 | -1.366 |
| secA2_input | 1.481 | -0.308 |
| delta_Rv3594 | 0.239 | 1.574 |
| delta_Rv3717 | 1.402 | 1.432 |
| delta_Rv3811 | 0.824 | 1.459 |
| delta_Rv0954 | 0.899 | 0.381 |
| PonA1 | -0.431 | 0.304 |
| EccD1_KO | 1.095 | 1.296 |
| EspI_KO | 1.315 | 1.417 |
| PE35_KO | 1.423 | 2.1 |
| PPE68_KO | 1.689 | 2.019 |
| glycerol2 | -0.495 | 0.408 |
| lignocerate | -0.631 | 0.023 |
| oleate | -0.038 | -1.141 |
| phosphatidylcholine | -0.242 | -0.563 |
| acetate | 0.0 | -0.527 |
| glucAc | 0.082 | -0.61 |
| Rv0950ko | 0.597 | 0.121 |
| Rv1096ko | 1.252 | 0.754 |
| Rv3684ko | -0.239 | 1.087 |
| delta_otsA_trehalose | -1.073 | 0.658 |