Top 10 genes with highest correlation to Rv1042c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1149/- | (cc=0.8949) | info on Rv1149/- |
| Rv1041c/- | (cc=0.6823) | info on Rv1041c/- |
| Rv1135c/PPE16 | (cc=0.63) | info on Rv1135c/PPE16 |
| Rv3144c/PPE52 | (cc=0.4829) | info on Rv3144c/PPE52 |
| Rv0540/- | (cc=0.4504) | info on Rv0540/- |
| Rv0578c/PE_PGRS7 | (cc=0.4456) | info on Rv0578c/PE_PGRS7 |
| Rv0546c/- | (cc=0.4453) | info on Rv0546c/- |
| Rv1071c/echA9 | (cc=0.4413) | info on Rv1071c/echA9 |
| Rv0621/- | (cc=0.4403) | info on Rv0621/- |
| Rv0755c/PPE12 | (cc=0.4396) | info on Rv0755c/PPE12 |
Correlation of Rv1042c/- with Rv1071c/echA9
Normalized LFCs for Rv1042c/-:
(description and provenance of datasets)
| Rv1042c/- | Rv1071c/echA9 | |
| Fe_supp_jason_reseq | -1.46 | -2.134 |
| low_pH_jason_reseq | -1.064 | -6.0 |
| NO_jason_reseq | -0.78 | -0.714 |
| B6_jason_reseq | 0.796 | -1.643 |
| MHCII_jason_reseq | 0.763 | -0.403 |
| Isoniazid02 | 0.451 | -0.38 |
| Rifampicin4 | 1.914 | 1.625 |
| Ethambutol3 | 0.814 | 2.909 |
| Meropenem3 | 0.994 | -0.565 |
| Vancomycin16 | 1.292 | 0.65 |
| Rv2680_day32 | -0.571 | -1.463 |
| H37Rv_KO_MarP | -0.032 | 0.131 |
| hypoxia_3wks | 1.049 | -2.245 |
| hypoxia_6wks | 1.33 | -1.779 |
| glycerol | 0.168 | -0.341 |
| cholesterol | 0.131 | -1.471 |
| AJ | 0.734 | -1.143 |
| Bibs02 | 0.372 | -0.359 |
| Bibs02c | 1.84 | -0.361 |
| BL6 | -0.98 | -0.587 |
| BL6a | 1.413 | -1.323 |
| BXD01 | -0.009 | -1.426 |
| BXD010 | 0.413 | -1.162 |
| BXD011 | -0.323 | -1.515 |
| BXD03 | 0.618 | -0.581 |
| BXD04 | -0.744 | -0.728 |
| BXD05 | 0.39 | -1.541 |
| BXD06 | 0.075 | -1.418 |
| BXD07 | 0.171 | -1.218 |
| BXD08 | -0.8 | -1.412 |
| BXD09 | 0.32 | -1.427 |
| CAST | 0.692 | -0.267 |
| CCcont | -1.018 | -0.661 |
| DS01 | 1.09 | 0.95 |
| DS02 | 0.922 | 1.531 |
| DS04 | 0.188 | 0.034 |
| DS0c | 0.592 | 0.484 |
| GP01 | -2.405 | -1.89 |
| GP02 | -0.64 | -2.563 |
| GP0c | -0.317 | -2.376 |
| NOD | 1.866 | -0.093 |
| NZO | 0.058 | -0.936 |
| PWK | 0.915 | -0.365 |
| H37Rv_KO_CtpC | 3.218 | 0.685 |
| H37Rv_KO_CtpD | 1.339 | -1.157 |
| H37Rv_KO_Rv1272 | 0.01 | -1.269 |
| H37Rv_KO_SugABC | -1.494 | -0.94 |
| H37Rv_KO_MbtN | 0.877 | -1.364 |
| Trans05 | 0.698 | -1.065 |
| macrophage_unactivated | -1.932 | -1.231 |
| IL1 | -0.033 | -1.658 |
| Rapamycin | 0.034 | -1.547 |
| Tcell | -0.551 | -0.674 |
| GMCSF | -0.383 | -0.771 |
| IFNab | -0.692 | -1.69 |
| IFNg | -1.187 | -2.996 |
| IFNg_GMCSF1 | -0.962 | -2.718 |
| Rv1432_day32 | 0.868 | -1.287 |
| Rv1565c_day32 | 0.485 | -0.403 |
| secA2_input | 1.481 | 0.167 |
| delta_Rv3594 | 0.239 | 0.653 |
| delta_Rv3717 | 1.402 | -0.289 |
| delta_Rv3811 | 0.824 | 0.296 |
| delta_Rv0954 | 0.899 | 0.845 |
| PonA1 | -0.431 | 0.205 |
| EccD1_KO | 1.095 | 0.398 |
| EspI_KO | 1.315 | 0.73 |
| PE35_KO | 1.423 | 0.181 |
| PPE68_KO | 1.689 | -0.138 |
| glycerol2 | -0.495 | 0.738 |
| lignocerate | -0.631 | 0.588 |
| oleate | -0.038 | 1.09 |
| phosphatidylcholine | -0.242 | 0.714 |
| acetate | 0.0 | 0.032 |
| glucAc | 0.082 | -0.28 |
| Rv0950ko | 0.597 | -0.449 |
| Rv1096ko | 1.252 | 0.582 |
| Rv3684ko | -0.239 | -0.829 |
| delta_otsA_trehalose | -1.073 | -0.355 |