Top 10 genes with highest correlation to Rv1012/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2020c/- | (cc=0.5169) | info on Rv2020c/- |
| Rv3482c/- | (cc=0.4805) | info on Rv3482c/- |
| Rv0044c/- | (cc=0.4694) | info on Rv0044c/- |
| Rv0325/- | (cc=0.4644) | info on Rv0325/- |
| Rv2076c/- | (cc=0.4616) | info on Rv2076c/- |
| Rv2382c/mbtC | (cc=0.4565) | info on Rv2382c/mbtC |
| Rv2651c/- | (cc=0.4451) | info on Rv2651c/- |
| Rv2064/cobG | (cc=0.4387) | info on Rv2064/cobG |
| Rv1858/modB | (cc=0.4378) | info on Rv1858/modB |
| Rv1632c/- | (cc=0.4376) | info on Rv1632c/- |
Correlation of Rv1012/- with Rv2076c/-
Normalized LFCs for Rv1012/-:
(description and provenance of datasets)
| Rv1012/- | Rv2076c/- | |
| Fe_supp_jason_reseq | 1.274 | 0.305 |
| low_pH_jason_reseq | -0.572 | -2.265 |
| NO_jason_reseq | -0.714 | 0.567 |
| B6_jason_reseq | 1.353 | 1.5 |
| MHCII_jason_reseq | 0.593 | 1.645 |
| Isoniazid02 | 0.509 | 2.357 |
| Rifampicin4 | 0.441 | 0.834 |
| Ethambutol3 | 2.008 | 0.362 |
| Meropenem3 | 1.366 | 0.175 |
| Vancomycin16 | 0.528 | 0.417 |
| Rv2680_day32 | -2.215 | 0.027 |
| H37Rv_KO_MarP | -0.229 | -0.444 |
| hypoxia_3wks | -0.068 | -0.582 |
| hypoxia_6wks | 0.624 | -0.787 |
| glycerol | -0.044 | -0.467 |
| cholesterol | 0.682 | -0.256 |
| AJ | 0.903 | 0.03 |
| Bibs02 | -0.185 | -0.197 |
| Bibs02c | -0.418 | 0.441 |
| BL6 | 0.255 | -0.961 |
| BL6a | -1.511 | -0.502 |
| BXD01 | 0.0 | -0.752 |
| BXD010 | -0.502 | -2.255 |
| BXD011 | -1.364 | -0.622 |
| BXD03 | -1.125 | -0.844 |
| BXD04 | -1.287 | -1.482 |
| BXD05 | -1.78 | -0.751 |
| BXD06 | -0.385 | -1.283 |
| BXD07 | -0.286 | -1.076 |
| BXD08 | 0.18 | -0.99 |
| BXD09 | -0.435 | -1.085 |
| CAST | 1.155 | 0.184 |
| CCcont | 0.123 | -1.147 |
| DS01 | 1.03 | 0.657 |
| DS02 | 1.119 | 0.399 |
| DS04 | -0.197 | 0.582 |
| DS0c | 0.746 | 1.012 |
| GP01 | 0.403 | -0.398 |
| GP02 | -0.819 | -1.033 |
| GP0c | 0.236 | -0.616 |
| NOD | 0.408 | -0.5 |
| NZO | 0.776 | -0.777 |
| PWK | 0.834 | -0.108 |
| H37Rv_KO_CtpC | -0.65 | -1.97 |
| H37Rv_KO_CtpD | -1.724 | 0.54 |
| H37Rv_KO_Rv1272 | -0.632 | -0.487 |
| H37Rv_KO_SugABC | -0.218 | -0.265 |
| H37Rv_KO_MbtN | -0.797 | 0.274 |
| Trans05 | -0.872 | -2.138 |
| macrophage_unactivated | 1.095 | 0.224 |
| IL1 | 0.276 | 0.288 |
| Rapamycin | 0.199 | 0.055 |
| Tcell | 0.091 | -0.567 |
| GMCSF | 0.752 | -0.224 |
| IFNab | 0.03 | -0.623 |
| IFNg | 1.216 | 1.753 |
| IFNg_GMCSF1 | 0.204 | -0.39 |
| Rv1432_day32 | 0.08 | 0.304 |
| Rv1565c_day32 | -0.147 | 0.461 |
| secA2_input | -0.817 | 0.185 |
| delta_Rv3594 | -0.024 | 0.359 |
| delta_Rv3717 | 1.279 | 1.125 |
| delta_Rv3811 | -0.122 | 1.087 |
| delta_Rv0954 | 0.735 | 0.258 |
| PonA1 | 0.832 | 0.703 |
| EccD1_KO | 1.237 | 0.687 |
| EspI_KO | -0.471 | -0.1 |
| PE35_KO | 0.222 | 0.779 |
| PPE68_KO | -1.232 | 0.371 |
| glycerol2 | 1.516 | 0.94 |
| lignocerate | 1.241 | 1.515 |
| oleate | 0.142 | 0.116 |
| phosphatidylcholine | 1.053 | 1.237 |
| acetate | 0.77 | 1.639 |
| glucAc | 0.449 | 1.644 |
| Rv0950ko | -0.479 | 0.814 |
| Rv1096ko | -0.651 | -0.133 |
| Rv3684ko | -1.32 | -0.386 |
| delta_otsA_trehalose | 0.263 | -0.252 |