Top 10 genes with highest correlation to Rv1003/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0732/secY | (cc=0.5156) | info on Rv0732/secY |
| Rv2966c/- | (cc=0.4972) | info on Rv2966c/- |
| Rv0866/moaE2 | (cc=0.48) | info on Rv0866/moaE2 |
| Rv2838c/rbfA | (cc=0.4696) | info on Rv2838c/rbfA |
| Rv2865/relF | (cc=0.4652) | info on Rv2865/relF |
| Rv2586c/secF | (cc=0.4592) | info on Rv2586c/secF |
| Rv3669/- | (cc=0.4431) | info on Rv3669/- |
| Rv2290/lppO | (cc=0.4329) | info on Rv2290/lppO |
| Rv1420/uvrC | (cc=0.4317) | info on Rv1420/uvrC |
| Rv2231c/cobC | (cc=0.4307) | info on Rv2231c/cobC |
Correlation of Rv1003/- with Rv0732/secY
Normalized LFCs for Rv1003/-:
(description and provenance of datasets)
| Rv1003/- | Rv0732/secY | |
| Fe_supp_jason_reseq | 0.526 | 0.218 |
| low_pH_jason_reseq | -0.848 | 0.0 |
| NO_jason_reseq | 0.137 | 0.0 |
| B6_jason_reseq | 0.37 | 0.0 |
| MHCII_jason_reseq | -0.738 | 0.135 |
| Isoniazid02 | 1.125 | 0.668 |
| Rifampicin4 | 1.053 | -0.523 |
| Ethambutol3 | 0.347 | -0.824 |
| Meropenem3 | -0.235 | -0.812 |
| Vancomycin16 | 0.639 | -0.796 |
| Rv2680_day32 | -0.522 | -0.131 |
| H37Rv_KO_MarP | -0.844 | -0.825 |
| hypoxia_3wks | -0.379 | -0.399 |
| hypoxia_6wks | 0.125 | 0.712 |
| glycerol | -0.075 | 0.992 |
| cholesterol | 1.517 | 0.614 |
| AJ | -1.598 | 0.0 |
| Bibs02 | 0.963 | 0.0 |
| Bibs02c | -0.156 | 0.0 |
| BL6 | 0.545 | 1.907 |
| BL6a | 0.138 | 0.198 |
| BXD01 | 0.658 | 0.458 |
| BXD010 | 1.844 | 0.0 |
| BXD011 | 0.211 | 0.127 |
| BXD03 | 0.418 | 0.0 |
| BXD04 | 1.42 | 1.184 |
| BXD05 | 0.181 | 0.0 |
| BXD06 | 0.483 | 0.0 |
| BXD07 | 0.313 | 0.138 |
| BXD08 | 1.245 | 0.0 |
| BXD09 | 0.435 | 0.268 |
| CAST | -0.085 | 0.0 |
| CCcont | 0.754 | 0.525 |
| DS01 | -1.177 | 0.0 |
| DS02 | -0.337 | 0.0 |
| DS04 | -1.477 | 0.37 |
| DS0c | -0.958 | 0.0 |
| GP01 | -1.001 | 0.0 |
| GP02 | -0.767 | 0.0 |
| GP0c | -0.896 | 0.357 |
| NOD | -0.348 | 0.0 |
| NZO | -1.24 | 0.0 |
| PWK | 0.136 | 0.0 |
| H37Rv_KO_CtpC | 0.502 | 0.0 |
| H37Rv_KO_CtpD | -0.964 | 0.0 |
| H37Rv_KO_Rv1272 | 0.234 | 0.0 |
| H37Rv_KO_SugABC | 1.715 | 0.189 |
| H37Rv_KO_MbtN | 1.826 | 1.912 |
| Trans05 | -1.454 | 0.0 |
| macrophage_unactivated | 0.0 | 0.363 |
| IL1 | -0.409 | -0.78 |
| Rapamycin | -0.135 | 0.0 |
| Tcell | 0.411 | 0.375 |
| GMCSF | 0.919 | -0.333 |
| IFNab | 0.946 | 0.348 |
| IFNg | 1.021 | 0.0 |
| IFNg_GMCSF1 | 1.093 | -0.396 |
| Rv1432_day32 | -0.278 | 0.439 |
| Rv1565c_day32 | -0.415 | 0.0 |
| secA2_input | -0.255 | -0.146 |
| delta_Rv3594 | 2.302 | 2.362 |
| delta_Rv3717 | 1.749 | 1.1 |
| delta_Rv3811 | 2.414 | 1.658 |
| delta_Rv0954 | 0.561 | 0.287 |
| PonA1 | 2.364 | 0.0 |
| EccD1_KO | 1.286 | -0.559 |
| EspI_KO | 1.449 | -0.75 |
| PE35_KO | -0.712 | -0.496 |
| PPE68_KO | -0.102 | 0.25 |
| glycerol2 | -2.044 | -1.595 |
| lignocerate | -1.316 | -1.386 |
| oleate | -1.533 | -1.239 |
| phosphatidylcholine | -1.293 | -1.594 |
| acetate | -0.229 | -0.352 |
| glucAc | -0.717 | -0.903 |
| Rv0950ko | -0.823 | -0.458 |
| Rv1096ko | -0.392 | -1.252 |
| Rv3684ko | -1.877 | -1.359 |
| delta_otsA_trehalose | -0.105 | -2.382 |