Top 10 genes with highest correlation to Rv1001/arcA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2407/- | (cc=0.4887) | info on Rv2407/- |
| Rv1834/lipZ | (cc=0.4686) | info on Rv1834/lipZ |
| Rv0089/- | (cc=0.4683) | info on Rv0089/- |
| Rv1686c/- | (cc=0.4662) | info on Rv1686c/- |
| Rv0368c/- | (cc=0.4534) | info on Rv0368c/- |
| Rv1852/ureG | (cc=0.4527) | info on Rv1852/ureG |
| Rv0992c/- | (cc=0.4513) | info on Rv0992c/- |
| Rv1527c/pks5 | (cc=0.4495) | info on Rv1527c/pks5 |
| Rv1226c/- | (cc=0.4431) | info on Rv1226c/- |
| Rv2826c/- | (cc=0.442) | info on Rv2826c/- |
Correlation of Rv1001/arcA with Rv1226c/-
Normalized LFCs for Rv1001/arcA:
(description and provenance of datasets)
| Rv1001/arcA | Rv1226c/- | |
| Fe_supp_jason_reseq | -1.085 | -0.039 |
| low_pH_jason_reseq | -0.228 | -0.811 |
| NO_jason_reseq | -0.638 | -0.087 |
| B6_jason_reseq | -0.595 | -0.439 |
| MHCII_jason_reseq | -0.084 | 0.257 |
| Isoniazid02 | -0.146 | 0.237 |
| Rifampicin4 | -0.347 | 0.693 |
| Ethambutol3 | -0.097 | 1.689 |
| Meropenem3 | 0.921 | 1.204 |
| Vancomycin16 | 0.329 | 0.751 |
| Rv2680_day32 | -0.112 | 0.427 |
| H37Rv_KO_MarP | 0.152 | 0.076 |
| hypoxia_3wks | -0.215 | -0.53 |
| hypoxia_6wks | -0.418 | -1.113 |
| glycerol | 0.348 | 1.004 |
| cholesterol | -0.47 | 0.242 |
| AJ | 0.43 | 1.355 |
| Bibs02 | 0.593 | 0.33 |
| Bibs02c | 0.011 | -0.086 |
| BL6 | -0.266 | -0.321 |
| BL6a | -0.362 | -1.129 |
| BXD01 | -0.736 | -0.861 |
| BXD010 | -0.364 | -1.256 |
| BXD011 | -0.165 | -0.599 |
| BXD03 | -0.007 | -1.658 |
| BXD04 | -0.098 | -0.341 |
| BXD05 | -0.221 | -0.084 |
| BXD06 | -0.461 | -0.96 |
| BXD07 | -0.236 | -0.876 |
| BXD08 | -0.608 | -1.127 |
| BXD09 | -0.417 | -1.191 |
| CAST | -0.058 | -0.083 |
| CCcont | -0.194 | -0.085 |
| DS01 | 0.315 | -0.173 |
| DS02 | 0.2 | 0.23 |
| DS04 | 0.039 | -0.573 |
| DS0c | -0.207 | 0.127 |
| GP01 | 0.493 | 1.206 |
| GP02 | -0.142 | 0.658 |
| GP0c | 0.247 | 0.218 |
| NOD | -0.493 | 0.067 |
| NZO | 0.04 | 0.419 |
| PWK | 0.593 | 0.233 |
| H37Rv_KO_CtpC | -0.451 | -0.726 |
| H37Rv_KO_CtpD | -0.121 | -0.35 |
| H37Rv_KO_Rv1272 | -0.158 | 0.007 |
| H37Rv_KO_SugABC | 0.89 | 0.653 |
| H37Rv_KO_MbtN | 0.205 | -0.501 |
| Trans05 | 0.728 | -0.04 |
| macrophage_unactivated | -0.581 | 0.041 |
| IL1 | 0.19 | 0.439 |
| Rapamycin | 0.175 | 0.344 |
| Tcell | 0.134 | -0.443 |
| GMCSF | 0.066 | -1.296 |
| IFNab | -0.23 | -0.369 |
| IFNg | -0.492 | -0.895 |
| IFNg_GMCSF1 | 0.374 | 0.716 |
| Rv1432_day32 | 1.235 | 0.057 |
| Rv1565c_day32 | -0.025 | -0.565 |
| secA2_input | 0.277 | 0.831 |
| delta_Rv3594 | 0.153 | -0.463 |
| delta_Rv3717 | -0.122 | 0.393 |
| delta_Rv3811 | -0.028 | -0.642 |
| delta_Rv0954 | 0.43 | -0.022 |
| PonA1 | -0.591 | 0.248 |
| EccD1_KO | 0.0 | 1.233 |
| EspI_KO | 0.605 | 0.659 |
| PE35_KO | 0.248 | 0.207 |
| PPE68_KO | 0.605 | 0.099 |
| glycerol2 | -0.053 | -0.511 |
| lignocerate | 0.459 | -0.168 |
| oleate | 0.0 | -0.464 |
| phosphatidylcholine | -0.204 | -0.147 |
| acetate | 1.042 | -0.229 |
| glucAc | 0.706 | -0.143 |
| Rv0950ko | 0.516 | 0.739 |
| Rv1096ko | 0.467 | 0.739 |
| Rv3684ko | 0.426 | -0.547 |
| delta_otsA_trehalose | 1.169 | 1.052 |