Top 10 genes with highest correlation to Rv1001/arcA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2407/- | (cc=0.4887) | info on Rv2407/- |
| Rv1834/lipZ | (cc=0.4686) | info on Rv1834/lipZ |
| Rv0089/- | (cc=0.4683) | info on Rv0089/- |
| Rv1686c/- | (cc=0.4662) | info on Rv1686c/- |
| Rv0368c/- | (cc=0.4534) | info on Rv0368c/- |
| Rv1852/ureG | (cc=0.4527) | info on Rv1852/ureG |
| Rv0992c/- | (cc=0.4513) | info on Rv0992c/- |
| Rv1527c/pks5 | (cc=0.4495) | info on Rv1527c/pks5 |
| Rv1226c/- | (cc=0.4431) | info on Rv1226c/- |
| Rv2826c/- | (cc=0.442) | info on Rv2826c/- |
Correlation of Rv1001/arcA with Rv0089/-
Normalized LFCs for Rv1001/arcA:
(description and provenance of datasets)
| Rv1001/arcA | Rv0089/- | |
| Fe_supp_jason_reseq | -1.085 | -0.617 |
| low_pH_jason_reseq | -0.228 | -0.221 |
| NO_jason_reseq | -0.638 | 0.047 |
| B6_jason_reseq | -0.595 | 0.241 |
| MHCII_jason_reseq | -0.084 | 0.487 |
| Isoniazid02 | -0.146 | 0.877 |
| Rifampicin4 | -0.347 | -0.701 |
| Ethambutol3 | -0.097 | -0.483 |
| Meropenem3 | 0.921 | -0.564 |
| Vancomycin16 | 0.329 | 0.0 |
| Rv2680_day32 | -0.112 | 1.554 |
| H37Rv_KO_MarP | 0.152 | 1.943 |
| hypoxia_3wks | -0.215 | -0.59 |
| hypoxia_6wks | -0.418 | -0.699 |
| glycerol | 0.348 | -1.188 |
| cholesterol | -0.47 | -0.61 |
| AJ | 0.43 | 0.069 |
| Bibs02 | 0.593 | 0.098 |
| Bibs02c | 0.011 | 0.0 |
| BL6 | -0.266 | -1.724 |
| BL6a | -0.362 | -1.411 |
| BXD01 | -0.736 | -1.681 |
| BXD010 | -0.364 | -1.478 |
| BXD011 | -0.165 | -1.727 |
| BXD03 | -0.007 | -1.397 |
| BXD04 | -0.098 | -0.973 |
| BXD05 | -0.221 | -1.529 |
| BXD06 | -0.461 | -1.642 |
| BXD07 | -0.236 | -2.006 |
| BXD08 | -0.608 | -2.382 |
| BXD09 | -0.417 | -1.596 |
| CAST | -0.058 | 0.492 |
| CCcont | -0.194 | -0.977 |
| DS01 | 0.315 | -0.209 |
| DS02 | 0.2 | 0.153 |
| DS04 | 0.039 | 0.462 |
| DS0c | -0.207 | 0.308 |
| GP01 | 0.493 | 0.326 |
| GP02 | -0.142 | -1.336 |
| GP0c | 0.247 | -0.489 |
| NOD | -0.493 | 0.145 |
| NZO | 0.04 | -0.1 |
| PWK | 0.593 | 0.389 |
| H37Rv_KO_CtpC | -0.451 | -1.138 |
| H37Rv_KO_CtpD | -0.121 | -3.064 |
| H37Rv_KO_Rv1272 | -0.158 | -0.742 |
| H37Rv_KO_SugABC | 0.89 | -0.481 |
| H37Rv_KO_MbtN | 0.205 | -1.571 |
| Trans05 | 0.728 | 0.008 |
| macrophage_unactivated | -0.581 | -2.727 |
| IL1 | 0.19 | -1.246 |
| Rapamycin | 0.175 | -2.071 |
| Tcell | 0.134 | -1.3 |
| GMCSF | 0.066 | -1.848 |
| IFNab | -0.23 | -2.524 |
| IFNg | -0.492 | -1.871 |
| IFNg_GMCSF1 | 0.374 | -0.936 |
| Rv1432_day32 | 1.235 | 0.301 |
| Rv1565c_day32 | -0.025 | 0.594 |
| secA2_input | 0.277 | -1.028 |
| delta_Rv3594 | 0.153 | 0.0 |
| delta_Rv3717 | -0.122 | -0.216 |
| delta_Rv3811 | -0.028 | 0.755 |
| delta_Rv0954 | 0.43 | 0.442 |
| PonA1 | -0.591 | -0.308 |
| EccD1_KO | 0.0 | -0.118 |
| EspI_KO | 0.605 | 1.221 |
| PE35_KO | 0.248 | 0.204 |
| PPE68_KO | 0.605 | 1.497 |
| glycerol2 | -0.053 | 1.494 |
| lignocerate | 0.459 | 1.736 |
| oleate | 0.0 | -0.505 |
| phosphatidylcholine | -0.204 | 1.304 |
| acetate | 1.042 | 2.168 |
| glucAc | 0.706 | 1.508 |
| Rv0950ko | 0.516 | -0.169 |
| Rv1096ko | 0.467 | 0.983 |
| Rv3684ko | 0.426 | 1.019 |
| delta_otsA_trehalose | 1.169 | 1.304 |