Top 10 genes with highest correlation to Rv1001/arcA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2407/- | (cc=0.4887) | info on Rv2407/- |
| Rv1834/lipZ | (cc=0.4686) | info on Rv1834/lipZ |
| Rv0089/- | (cc=0.4683) | info on Rv0089/- |
| Rv1686c/- | (cc=0.4662) | info on Rv1686c/- |
| Rv0368c/- | (cc=0.4534) | info on Rv0368c/- |
| Rv1852/ureG | (cc=0.4527) | info on Rv1852/ureG |
| Rv0992c/- | (cc=0.4513) | info on Rv0992c/- |
| Rv1527c/pks5 | (cc=0.4495) | info on Rv1527c/pks5 |
| Rv1226c/- | (cc=0.4431) | info on Rv1226c/- |
| Rv2826c/- | (cc=0.442) | info on Rv2826c/- |
Correlation of Rv1001/arcA with Rv2407/-
Normalized LFCs for Rv1001/arcA:
(description and provenance of datasets)
| Rv1001/arcA | Rv2407/- | |
| Fe_supp_jason_reseq | -1.085 | -0.867 |
| low_pH_jason_reseq | -0.228 | -0.539 |
| NO_jason_reseq | -0.638 | 0.071 |
| B6_jason_reseq | -0.595 | -0.483 |
| MHCII_jason_reseq | -0.084 | 0.108 |
| Isoniazid02 | -0.146 | 0.54 |
| Rifampicin4 | -0.347 | 0.154 |
| Ethambutol3 | -0.097 | 1.069 |
| Meropenem3 | 0.921 | 0.627 |
| Vancomycin16 | 0.329 | 0.608 |
| Rv2680_day32 | -0.112 | 0.851 |
| H37Rv_KO_MarP | 0.152 | -0.535 |
| hypoxia_3wks | -0.215 | -0.152 |
| hypoxia_6wks | -0.418 | -0.04 |
| glycerol | 0.348 | -0.118 |
| cholesterol | -0.47 | -0.351 |
| AJ | 0.43 | -0.437 |
| Bibs02 | 0.593 | 0.427 |
| Bibs02c | 0.011 | -0.3 |
| BL6 | -0.266 | -0.334 |
| BL6a | -0.362 | -0.433 |
| BXD01 | -0.736 | -0.348 |
| BXD010 | -0.364 | 0.124 |
| BXD011 | -0.165 | -0.259 |
| BXD03 | -0.007 | -0.135 |
| BXD04 | -0.098 | -1.257 |
| BXD05 | -0.221 | 0.107 |
| BXD06 | -0.461 | -0.532 |
| BXD07 | -0.236 | -0.1 |
| BXD08 | -0.608 | 0.175 |
| BXD09 | -0.417 | 0.192 |
| CAST | -0.058 | 0.128 |
| CCcont | -0.194 | -0.424 |
| DS01 | 0.315 | -0.373 |
| DS02 | 0.2 | -0.249 |
| DS04 | 0.039 | 0.492 |
| DS0c | -0.207 | -0.526 |
| GP01 | 0.493 | 1.309 |
| GP02 | -0.142 | -0.195 |
| GP0c | 0.247 | 0.276 |
| NOD | -0.493 | 1.054 |
| NZO | 0.04 | 0.217 |
| PWK | 0.593 | 0.098 |
| H37Rv_KO_CtpC | -0.451 | -0.14 |
| H37Rv_KO_CtpD | -0.121 | 0.537 |
| H37Rv_KO_Rv1272 | -0.158 | -0.037 |
| H37Rv_KO_SugABC | 0.89 | 0.897 |
| H37Rv_KO_MbtN | 0.205 | -0.125 |
| Trans05 | 0.728 | 0.414 |
| macrophage_unactivated | -0.581 | -0.716 |
| IL1 | 0.19 | -0.353 |
| Rapamycin | 0.175 | -0.15 |
| Tcell | 0.134 | -0.189 |
| GMCSF | 0.066 | -0.428 |
| IFNab | -0.23 | -0.423 |
| IFNg | -0.492 | 0.174 |
| IFNg_GMCSF1 | 0.374 | 0.456 |
| Rv1432_day32 | 1.235 | 0.623 |
| Rv1565c_day32 | -0.025 | 0.33 |
| secA2_input | 0.277 | 1.647 |
| delta_Rv3594 | 0.153 | -0.168 |
| delta_Rv3717 | -0.122 | 0.011 |
| delta_Rv3811 | -0.028 | -0.294 |
| delta_Rv0954 | 0.43 | -0.093 |
| PonA1 | -0.591 | -0.361 |
| EccD1_KO | 0.0 | 1.375 |
| EspI_KO | 0.605 | 1.124 |
| PE35_KO | 0.248 | 0.493 |
| PPE68_KO | 0.605 | 0.541 |
| glycerol2 | -0.053 | -0.105 |
| lignocerate | 0.459 | -0.012 |
| oleate | 0.0 | 0.238 |
| phosphatidylcholine | -0.204 | 0.099 |
| acetate | 1.042 | 0.151 |
| glucAc | 0.706 | 0.144 |
| Rv0950ko | 0.516 | 0.85 |
| Rv1096ko | 0.467 | 0.787 |
| Rv3684ko | 0.426 | 0.717 |
| delta_otsA_trehalose | 1.169 | 1.7 |