Top 10 genes with highest correlation to Rv0983/pepD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2051c/ppm1 | (cc=0.5852) | info on Rv2051c/ppm1 |
| Rv0204c/- | (cc=0.5743) | info on Rv0204c/- |
| Rv1234/- | (cc=0.5123) | info on Rv1234/- |
| Rv1496/- | (cc=0.5089) | info on Rv1496/- |
| Rv3545c/cyp125 | (cc=0.493) | info on Rv3545c/cyp125 |
| Rv2734/- | (cc=0.472) | info on Rv2734/- |
| Rv3678c/- | (cc=0.468) | info on Rv3678c/- |
| Rv1159/pimE | (cc=0.4543) | info on Rv1159/pimE |
| Rv1456c/- | (cc=0.4494) | info on Rv1456c/- |
| Rv0126/treS | (cc=0.449) | info on Rv0126/treS |
Correlation of Rv0983/pepD with Rv0204c/-
Normalized LFCs for Rv0983/pepD:
(description and provenance of datasets)
| Rv0983/pepD | Rv0204c/- | |
| Fe_supp_jason_reseq | 0.856 | 0.961 |
| low_pH_jason_reseq | -0.873 | 0.939 |
| NO_jason_reseq | -0.299 | 0.218 |
| B6_jason_reseq | -1.908 | -2.112 |
| MHCII_jason_reseq | -2.166 | -2.786 |
| Isoniazid02 | -0.615 | -1.411 |
| Rifampicin4 | -2.226 | -4.462 |
| Ethambutol3 | 1.347 | 4.649 |
| Meropenem3 | 1.247 | -2.221 |
| Vancomycin16 | -0.761 | -4.918 |
| Rv2680_day32 | -1.273 | -2.496 |
| H37Rv_KO_MarP | -2.203 | -4.404 |
| hypoxia_3wks | -1.017 | -6.0 |
| hypoxia_6wks | -1.599 | -3.604 |
| glycerol | 0.686 | -1.954 |
| cholesterol | -0.097 | -1.813 |
| AJ | -0.361 | -2.904 |
| Bibs02 | -0.62 | -1.025 |
| Bibs02c | -2.47 | -0.671 |
| BL6 | 0.425 | -0.744 |
| BL6a | -0.627 | -0.918 |
| BXD01 | -0.358 | -1.547 |
| BXD010 | 0.118 | -1.522 |
| BXD011 | 0.099 | -0.553 |
| BXD03 | 0.0 | -1.006 |
| BXD04 | -0.288 | -0.24 |
| BXD05 | 0.74 | -0.898 |
| BXD06 | -0.258 | -1.292 |
| BXD07 | 0.188 | -0.824 |
| BXD08 | -0.481 | -1.665 |
| BXD09 | 0.248 | -1.431 |
| CAST | -1.49 | -2.469 |
| CCcont | 0.778 | 1.744 |
| DS01 | -0.963 | -1.324 |
| DS02 | -2.568 | -0.64 |
| DS04 | -0.413 | -0.842 |
| DS0c | -1.537 | -0.754 |
| GP01 | 0.031 | -1.622 |
| GP02 | -0.797 | -1.367 |
| GP0c | 0.515 | -0.729 |
| NOD | -0.308 | -2.963 |
| NZO | 0.406 | -2.37 |
| PWK | -0.131 | -1.898 |
| H37Rv_KO_CtpC | 1.691 | 0.124 |
| H37Rv_KO_CtpD | 0.324 | -0.942 |
| H37Rv_KO_Rv1272 | 0.999 | -1.365 |
| H37Rv_KO_SugABC | 0.476 | 0.96 |
| H37Rv_KO_MbtN | 0.196 | 0.152 |
| Trans05 | 0.021 | 0.099 |
| macrophage_unactivated | 1.108 | 1.285 |
| IL1 | 1.456 | 0.0 |
| Rapamycin | 1.077 | -0.433 |
| Tcell | 1.144 | 1.87 |
| GMCSF | 0.795 | 1.745 |
| IFNab | -0.538 | -0.426 |
| IFNg | 1.066 | 3.48 |
| IFNg_GMCSF1 | 1.049 | 4.047 |
| Rv1432_day32 | -2.351 | -3.437 |
| Rv1565c_day32 | -0.051 | -0.706 |
| secA2_input | 0.16 | 1.193 |
| delta_Rv3594 | -0.783 | -0.011 |
| delta_Rv3717 | -0.293 | 1.027 |
| delta_Rv3811 | -0.318 | 0.79 |
| delta_Rv0954 | 1.076 | -1.23 |
| PonA1 | 1.335 | -0.487 |
| EccD1_KO | 1.003 | -0.332 |
| EspI_KO | -0.165 | -0.984 |
| PE35_KO | -0.085 | -2.482 |
| PPE68_KO | 0.825 | -0.506 |
| glycerol2 | -0.511 | -3.656 |
| lignocerate | -1.118 | -2.407 |
| oleate | -1.394 | -5.117 |
| phosphatidylcholine | -0.993 | -1.843 |
| acetate | 0.241 | 1.234 |
| glucAc | 0.477 | 0.972 |
| Rv0950ko | 0.718 | -0.793 |
| Rv1096ko | 0.181 | 0.534 |
| Rv3684ko | 0.236 | -0.822 |
| delta_otsA_trehalose | -0.897 | -2.386 |