Top 10 genes with highest correlation to Rv0983/pepD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2051c/ppm1 | (cc=0.5852) | info on Rv2051c/ppm1 |
| Rv0204c/- | (cc=0.5743) | info on Rv0204c/- |
| Rv1234/- | (cc=0.5123) | info on Rv1234/- |
| Rv1496/- | (cc=0.5089) | info on Rv1496/- |
| Rv3545c/cyp125 | (cc=0.493) | info on Rv3545c/cyp125 |
| Rv2734/- | (cc=0.472) | info on Rv2734/- |
| Rv3678c/- | (cc=0.468) | info on Rv3678c/- |
| Rv1159/pimE | (cc=0.4543) | info on Rv1159/pimE |
| Rv1456c/- | (cc=0.4494) | info on Rv1456c/- |
| Rv0126/treS | (cc=0.449) | info on Rv0126/treS |
Correlation of Rv0983/pepD with Rv2051c/ppm1
Normalized LFCs for Rv0983/pepD:
(description and provenance of datasets)
| Rv0983/pepD | Rv2051c/ppm1 | |
| Fe_supp_jason_reseq | 0.856 | 3.73 |
| low_pH_jason_reseq | -0.873 | -1.474 |
| NO_jason_reseq | -0.299 | -0.339 |
| B6_jason_reseq | -1.908 | -1.713 |
| MHCII_jason_reseq | -2.166 | -1.194 |
| Isoniazid02 | -0.615 | -1.961 |
| Rifampicin4 | -2.226 | -3.476 |
| Ethambutol3 | 1.347 | -1.037 |
| Meropenem3 | 1.247 | -0.379 |
| Vancomycin16 | -0.761 | -3.94 |
| Rv2680_day32 | -1.273 | -3.375 |
| H37Rv_KO_MarP | -2.203 | -4.593 |
| hypoxia_3wks | -1.017 | -3.166 |
| hypoxia_6wks | -1.599 | -2.328 |
| glycerol | 0.686 | 1.627 |
| cholesterol | -0.097 | 1.338 |
| AJ | -0.361 | -1.76 |
| Bibs02 | -0.62 | -0.062 |
| Bibs02c | -2.47 | -1.446 |
| BL6 | 0.425 | -0.509 |
| BL6a | -0.627 | -1.125 |
| BXD01 | -0.358 | -1.183 |
| BXD010 | 0.118 | -0.727 |
| BXD011 | 0.099 | -0.8 |
| BXD03 | 0.0 | -0.094 |
| BXD04 | -0.288 | -0.855 |
| BXD05 | 0.74 | -0.764 |
| BXD06 | -0.258 | -1.213 |
| BXD07 | 0.188 | -0.708 |
| BXD08 | -0.481 | -1.208 |
| BXD09 | 0.248 | -1.168 |
| CAST | -1.49 | -1.446 |
| CCcont | 0.778 | 2.086 |
| DS01 | -0.963 | -0.53 |
| DS02 | -2.568 | 0.21 |
| DS04 | -0.413 | -0.888 |
| DS0c | -1.537 | 0.943 |
| GP01 | 0.031 | -1.167 |
| GP02 | -0.797 | -0.984 |
| GP0c | 0.515 | -0.899 |
| NOD | -0.308 | -1.149 |
| NZO | 0.406 | -1.812 |
| PWK | -0.131 | -0.524 |
| H37Rv_KO_CtpC | 1.691 | 1.204 |
| H37Rv_KO_CtpD | 0.324 | 0.402 |
| H37Rv_KO_Rv1272 | 0.999 | -0.44 |
| H37Rv_KO_SugABC | 0.476 | 0.211 |
| H37Rv_KO_MbtN | 0.196 | -0.149 |
| Trans05 | 0.021 | -0.469 |
| macrophage_unactivated | 1.108 | 0.65 |
| IL1 | 1.456 | -0.914 |
| Rapamycin | 1.077 | 0.328 |
| Tcell | 1.144 | 0.515 |
| GMCSF | 0.795 | -0.636 |
| IFNab | -0.538 | 0.623 |
| IFNg | 1.066 | -0.644 |
| IFNg_GMCSF1 | 1.049 | 0.17 |
| Rv1432_day32 | -2.351 | -3.609 |
| Rv1565c_day32 | -0.051 | 0.0 |
| secA2_input | 0.16 | 2.099 |
| delta_Rv3594 | -0.783 | -2.155 |
| delta_Rv3717 | -0.293 | -2.639 |
| delta_Rv3811 | -0.318 | -2.501 |
| delta_Rv0954 | 1.076 | 1.193 |
| PonA1 | 1.335 | 2.433 |
| EccD1_KO | 1.003 | 0.477 |
| EspI_KO | -0.165 | 0.525 |
| PE35_KO | -0.085 | -0.543 |
| PPE68_KO | 0.825 | -0.141 |
| glycerol2 | -0.511 | -2.149 |
| lignocerate | -1.118 | -2.276 |
| oleate | -1.394 | -4.353 |
| phosphatidylcholine | -0.993 | -0.892 |
| acetate | 0.241 | 0.244 |
| glucAc | 0.477 | -0.209 |
| Rv0950ko | 0.718 | -0.072 |
| Rv1096ko | 0.181 | -0.072 |
| Rv3684ko | 0.236 | 0.157 |
| delta_otsA_trehalose | -0.897 | 0.111 |