Top 10 genes with highest correlation to Rv0928/pstS3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0930/pstA1 | (cc=0.9729) | info on Rv0930/pstA1 |
| Rv0820/phoT | (cc=0.9705) | info on Rv0820/phoT |
| Rv0929/pstC2 | (cc=0.9699) | info on Rv0929/pstC2 |
| Rv0818/- | (cc=0.8532) | info on Rv0818/- |
| Rv1925/fadD31 | (cc=0.7908) | info on Rv1925/fadD31 |
| Rv0924c/mntH | (cc=0.7725) | info on Rv0924c/mntH |
| Rv1058/fadD14 | (cc=0.7657) | info on Rv1058/fadD14 |
| Rv3050c/- | (cc=0.7657) | info on Rv3050c/- |
| Rv0642c/mmaA4 | (cc=0.7472) | info on Rv0642c/mmaA4 |
| Rv0989c/grcC2 | (cc=0.7351) | info on Rv0989c/grcC2 |
Correlation of Rv0928/pstS3 with Rv0929/pstC2
Normalized LFCs for Rv0928/pstS3:
(description and provenance of datasets)
| Rv0928/pstS3 | Rv0929/pstC2 | |
| Fe_supp_jason_reseq | -3.391 | -2.603 |
| low_pH_jason_reseq | 1.549 | 3.033 |
| NO_jason_reseq | -3.363 | -2.625 |
| B6_jason_reseq | 0.406 | 1.639 |
| MHCII_jason_reseq | 0.372 | 0.514 |
| Isoniazid02 | 0.156 | -0.281 |
| Rifampicin4 | -4.059 | -3.831 |
| Ethambutol3 | -0.989 | 1.007 |
| Meropenem3 | -2.653 | -1.942 |
| Vancomycin16 | -2.26 | -1.647 |
| Rv2680_day32 | 3.982 | 3.528 |
| H37Rv_KO_MarP | -2.74 | -3.056 |
| hypoxia_3wks | -3.413 | -4.406 |
| hypoxia_6wks | 1.128 | -0.061 |
| glycerol | 4.051 | 1.599 |
| cholesterol | 3.767 | 3.859 |
| AJ | 1.99 | 0.573 |
| Bibs02 | 1.819 | 2.832 |
| Bibs02c | 2.23 | 1.441 |
| BL6 | 5.545 | 5.842 |
| BL6a | 6.0 | 6.0 |
| BXD01 | 6.0 | 6.0 |
| BXD010 | 6.0 | 6.0 |
| BXD011 | 6.0 | 6.0 |
| BXD03 | 5.608 | 5.602 |
| BXD04 | 6.0 | 6.0 |
| BXD05 | 6.0 | 6.0 |
| BXD06 | 6.0 | 6.0 |
| BXD07 | 6.0 | 6.0 |
| BXD08 | 6.0 | 6.0 |
| BXD09 | 6.0 | 6.0 |
| CAST | 2.334 | 2.361 |
| CCcont | 3.228 | 3.417 |
| DS01 | 0.0 | -0.352 |
| DS02 | 0.101 | 0.285 |
| DS04 | 2.0 | 3.18 |
| DS0c | 1.053 | 0.762 |
| GP01 | 5.887 | 4.532 |
| GP02 | 5.592 | 6.0 |
| GP0c | 6.0 | 6.0 |
| NOD | 0.649 | 0.295 |
| NZO | 2.227 | 0.38 |
| PWK | 4.575 | 2.384 |
| H37Rv_KO_CtpC | 3.13 | 4.283 |
| H37Rv_KO_CtpD | 1.414 | 2.232 |
| H37Rv_KO_Rv1272 | 4.357 | 5.607 |
| H37Rv_KO_SugABC | 3.955 | 5.047 |
| H37Rv_KO_MbtN | 6.0 | 6.0 |
| Trans05 | 5.513 | 5.884 |
| macrophage_unactivated | -2.632 | -2.509 |
| IL1 | -3.073 | -2.358 |
| Rapamycin | -3.492 | -3.686 |
| Tcell | -2.47 | -1.922 |
| GMCSF | -3.11 | -2.698 |
| IFNab | 2.618 | 3.419 |
| IFNg | -5.161 | -4.479 |
| IFNg_GMCSF1 | -4.672 | -5.156 |
| Rv1432_day32 | 6.0 | 6.0 |
| Rv1565c_day32 | -0.314 | 0.415 |
| secA2_input | -1.969 | -3.467 |
| delta_Rv3594 | -0.055 | 1.036 |
| delta_Rv3717 | 2.024 | 3.279 |
| delta_Rv3811 | 0.581 | 1.152 |
| delta_Rv0954 | -3.635 | -3.841 |
| PonA1 | -3.624 | -2.253 |
| EccD1_KO | -2.447 | -1.533 |
| EspI_KO | -1.258 | -1.974 |
| PE35_KO | -0.557 | -0.601 |
| PPE68_KO | -1.51 | -0.765 |
| glycerol2 | -4.89 | -4.614 |
| lignocerate | -1.422 | -2.423 |
| oleate | -3.927 | -4.669 |
| phosphatidylcholine | -2.553 | -3.748 |
| acetate | -0.17 | -0.83 |
| glucAc | -0.089 | -1.023 |
| Rv0950ko | -3.986 | -4.158 |
| Rv1096ko | 1.674 | 0.344 |
| Rv3684ko | 0.082 | -0.249 |
| delta_otsA_trehalose | -0.532 | -1.89 |