Top 10 genes with highest correlation to Rv0928/pstS3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0930/pstA1 | (cc=0.9729) | info on Rv0930/pstA1 |
| Rv0820/phoT | (cc=0.9705) | info on Rv0820/phoT |
| Rv0929/pstC2 | (cc=0.9699) | info on Rv0929/pstC2 |
| Rv0818/- | (cc=0.8532) | info on Rv0818/- |
| Rv1925/fadD31 | (cc=0.7908) | info on Rv1925/fadD31 |
| Rv0924c/mntH | (cc=0.7725) | info on Rv0924c/mntH |
| Rv1058/fadD14 | (cc=0.7657) | info on Rv1058/fadD14 |
| Rv3050c/- | (cc=0.7657) | info on Rv3050c/- |
| Rv0642c/mmaA4 | (cc=0.7472) | info on Rv0642c/mmaA4 |
| Rv0989c/grcC2 | (cc=0.7351) | info on Rv0989c/grcC2 |
Correlation of Rv0928/pstS3 with Rv0818/-
Normalized LFCs for Rv0928/pstS3:
(description and provenance of datasets)
| Rv0928/pstS3 | Rv0818/- | |
| Fe_supp_jason_reseq | -3.391 | -0.466 |
| low_pH_jason_reseq | 1.549 | 1.663 |
| NO_jason_reseq | -3.363 | 0.299 |
| B6_jason_reseq | 0.406 | 2.784 |
| MHCII_jason_reseq | 0.372 | 0.757 |
| Isoniazid02 | 0.156 | 2.415 |
| Rifampicin4 | -4.059 | -0.95 |
| Ethambutol3 | -0.989 | -0.032 |
| Meropenem3 | -2.653 | -3.061 |
| Vancomycin16 | -2.26 | -0.119 |
| Rv2680_day32 | 3.982 | 2.059 |
| H37Rv_KO_MarP | -2.74 | -1.637 |
| hypoxia_3wks | -3.413 | 0.367 |
| hypoxia_6wks | 1.128 | 2.08 |
| glycerol | 4.051 | 1.625 |
| cholesterol | 3.767 | 1.407 |
| AJ | 1.99 | 3.225 |
| Bibs02 | 1.819 | 0.135 |
| Bibs02c | 2.23 | 0.406 |
| BL6 | 5.545 | 2.235 |
| BL6a | 6.0 | 2.921 |
| BXD01 | 6.0 | 3.92 |
| BXD010 | 6.0 | 3.084 |
| BXD011 | 6.0 | 4.512 |
| BXD03 | 5.608 | 2.542 |
| BXD04 | 6.0 | 3.35 |
| BXD05 | 6.0 | 2.832 |
| BXD06 | 6.0 | 4.243 |
| BXD07 | 6.0 | 3.141 |
| BXD08 | 6.0 | 3.665 |
| BXD09 | 6.0 | 2.815 |
| CAST | 2.334 | 5.169 |
| CCcont | 3.228 | 1.299 |
| DS01 | 0.0 | 0.072 |
| DS02 | 0.101 | 0.682 |
| DS04 | 2.0 | 1.861 |
| DS0c | 1.053 | -0.281 |
| GP01 | 5.887 | 2.658 |
| GP02 | 5.592 | 1.581 |
| GP0c | 6.0 | 4.679 |
| NOD | 0.649 | 2.983 |
| NZO | 2.227 | 2.753 |
| PWK | 4.575 | 5.465 |
| H37Rv_KO_CtpC | 3.13 | 0.242 |
| H37Rv_KO_CtpD | 1.414 | 1.609 |
| H37Rv_KO_Rv1272 | 4.357 | 2.139 |
| H37Rv_KO_SugABC | 3.955 | 3.01 |
| H37Rv_KO_MbtN | 6.0 | 3.581 |
| Trans05 | 5.513 | 2.839 |
| macrophage_unactivated | -2.632 | -1.869 |
| IL1 | -3.073 | -2.711 |
| Rapamycin | -3.492 | -2.888 |
| Tcell | -2.47 | 0.267 |
| GMCSF | -3.11 | -2.627 |
| IFNab | 2.618 | 0.925 |
| IFNg | -5.161 | -4.311 |
| IFNg_GMCSF1 | -4.672 | -2.815 |
| Rv1432_day32 | 6.0 | 4.215 |
| Rv1565c_day32 | -0.314 | 1.248 |
| secA2_input | -1.969 | -0.106 |
| delta_Rv3594 | -0.055 | 0.312 |
| delta_Rv3717 | 2.024 | 2.38 |
| delta_Rv3811 | 0.581 | 1.152 |
| delta_Rv0954 | -3.635 | -0.456 |
| PonA1 | -3.624 | -0.777 |
| EccD1_KO | -2.447 | -2.582 |
| EspI_KO | -1.258 | -1.874 |
| PE35_KO | -0.557 | -0.143 |
| PPE68_KO | -1.51 | -1.037 |
| glycerol2 | -4.89 | -1.372 |
| lignocerate | -1.422 | -0.48 |
| oleate | -3.927 | -2.42 |
| phosphatidylcholine | -2.553 | -0.944 |
| acetate | -0.17 | -0.266 |
| glucAc | -0.089 | -0.073 |
| Rv0950ko | -3.986 | -1.894 |
| Rv1096ko | 1.674 | 0.012 |
| Rv3684ko | 0.082 | 0.57 |
| delta_otsA_trehalose | -0.532 | -0.379 |