Top 10 genes with highest correlation to Rv0928/pstS3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0930/pstA1 | (cc=0.9729) | info on Rv0930/pstA1 |
| Rv0820/phoT | (cc=0.9705) | info on Rv0820/phoT |
| Rv0929/pstC2 | (cc=0.9699) | info on Rv0929/pstC2 |
| Rv0818/- | (cc=0.8532) | info on Rv0818/- |
| Rv1925/fadD31 | (cc=0.7908) | info on Rv1925/fadD31 |
| Rv0924c/mntH | (cc=0.7725) | info on Rv0924c/mntH |
| Rv1058/fadD14 | (cc=0.7657) | info on Rv1058/fadD14 |
| Rv3050c/- | (cc=0.7657) | info on Rv3050c/- |
| Rv0642c/mmaA4 | (cc=0.7472) | info on Rv0642c/mmaA4 |
| Rv0989c/grcC2 | (cc=0.7351) | info on Rv0989c/grcC2 |
Correlation of Rv0928/pstS3 with Rv0930/pstA1
Normalized LFCs for Rv0928/pstS3:
(description and provenance of datasets)
| Rv0928/pstS3 | Rv0930/pstA1 | |
| Fe_supp_jason_reseq | -3.391 | -3.511 |
| low_pH_jason_reseq | 1.549 | 1.514 |
| NO_jason_reseq | -3.363 | -4.528 |
| B6_jason_reseq | 0.406 | 0.559 |
| MHCII_jason_reseq | 0.372 | 0.542 |
| Isoniazid02 | 0.156 | -0.895 |
| Rifampicin4 | -4.059 | -2.475 |
| Ethambutol3 | -0.989 | -0.804 |
| Meropenem3 | -2.653 | -1.095 |
| Vancomycin16 | -2.26 | -0.873 |
| Rv2680_day32 | 3.982 | 4.124 |
| H37Rv_KO_MarP | -2.74 | -1.709 |
| hypoxia_3wks | -3.413 | -4.797 |
| hypoxia_6wks | 1.128 | -0.643 |
| glycerol | 4.051 | 2.384 |
| cholesterol | 3.767 | 3.675 |
| AJ | 1.99 | 2.151 |
| Bibs02 | 1.819 | 2.099 |
| Bibs02c | 2.23 | 3.109 |
| BL6 | 5.545 | 5.861 |
| BL6a | 6.0 | 6.0 |
| BXD01 | 6.0 | 6.0 |
| BXD010 | 6.0 | 6.0 |
| BXD011 | 6.0 | 6.0 |
| BXD03 | 5.608 | 5.702 |
| BXD04 | 6.0 | 6.0 |
| BXD05 | 6.0 | 6.0 |
| BXD06 | 6.0 | 6.0 |
| BXD07 | 6.0 | 6.0 |
| BXD08 | 6.0 | 6.0 |
| BXD09 | 6.0 | 6.0 |
| CAST | 2.334 | 3.707 |
| CCcont | 3.228 | 3.688 |
| DS01 | 0.0 | 1.591 |
| DS02 | 0.101 | 2.105 |
| DS04 | 2.0 | 2.995 |
| DS0c | 1.053 | 0.652 |
| GP01 | 5.887 | 5.309 |
| GP02 | 5.592 | 5.465 |
| GP0c | 6.0 | 6.0 |
| NOD | 0.649 | 2.758 |
| NZO | 2.227 | 2.082 |
| PWK | 4.575 | 4.287 |
| H37Rv_KO_CtpC | 3.13 | 4.761 |
| H37Rv_KO_CtpD | 1.414 | 1.322 |
| H37Rv_KO_Rv1272 | 4.357 | 4.933 |
| H37Rv_KO_SugABC | 3.955 | 4.965 |
| H37Rv_KO_MbtN | 6.0 | 6.0 |
| Trans05 | 5.513 | 5.408 |
| macrophage_unactivated | -2.632 | -2.285 |
| IL1 | -3.073 | -2.847 |
| Rapamycin | -3.492 | -3.428 |
| Tcell | -2.47 | -1.232 |
| GMCSF | -3.11 | -2.64 |
| IFNab | 2.618 | 2.833 |
| IFNg | -5.161 | -3.643 |
| IFNg_GMCSF1 | -4.672 | -4.515 |
| Rv1432_day32 | 6.0 | 6.0 |
| Rv1565c_day32 | -0.314 | -0.554 |
| secA2_input | -1.969 | -1.904 |
| delta_Rv3594 | -0.055 | 0.231 |
| delta_Rv3717 | 2.024 | 2.636 |
| delta_Rv3811 | 0.581 | 0.754 |
| delta_Rv0954 | -3.635 | -3.748 |
| PonA1 | -3.624 | -2.389 |
| EccD1_KO | -2.447 | -2.999 |
| EspI_KO | -1.258 | -2.923 |
| PE35_KO | -0.557 | -1.552 |
| PPE68_KO | -1.51 | -2.227 |
| glycerol2 | -4.89 | -5.348 |
| lignocerate | -1.422 | -1.016 |
| oleate | -3.927 | -5.412 |
| phosphatidylcholine | -2.553 | -3.438 |
| acetate | -0.17 | -0.605 |
| glucAc | -0.089 | -0.409 |
| Rv0950ko | -3.986 | -3.95 |
| Rv1096ko | 1.674 | 0.537 |
| Rv3684ko | 0.082 | -0.517 |
| delta_otsA_trehalose | -0.532 | 0.296 |