Top 10 genes with highest correlation to Rv0881/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3416/whiB3 | (cc=0.4793) | info on Rv3416/whiB3 |
| Rv2742c/- | (cc=0.4764) | info on Rv2742c/- |
| Rv2002/fabG3 | (cc=0.4705) | info on Rv2002/fabG3 |
| Rv3652/PE_PGRS60 | (cc=0.4674) | info on Rv3652/PE_PGRS60 |
| Rv3078/hab | (cc=0.4657) | info on Rv3078/hab |
| Rv2226/- | (cc=0.4566) | info on Rv2226/- |
| Rv1769/- | (cc=0.4547) | info on Rv1769/- |
| Rv0449c/- | (cc=0.4546) | info on Rv0449c/- |
| Rv0609/vapC28 | (cc=0.4463) | info on Rv0609/vapC28 |
| Rv0521/- | (cc=0.44) | info on Rv0521/- |
Correlation of Rv0881/- with Rv0609/vapC28
Normalized LFCs for Rv0881/-:
(description and provenance of datasets)
| Rv0881/- | Rv0609/vapC28 | |
| Fe_supp_jason_reseq | -1.579 | -1.708 |
| low_pH_jason_reseq | 0.738 | -1.253 |
| NO_jason_reseq | 0.11 | -0.575 |
| B6_jason_reseq | -0.982 | -1.243 |
| MHCII_jason_reseq | -0.522 | -0.529 |
| Isoniazid02 | -0.358 | 0.032 |
| Rifampicin4 | -0.447 | -0.617 |
| Ethambutol3 | 0.164 | -0.083 |
| Meropenem3 | 0.351 | -0.068 |
| Vancomycin16 | -0.037 | 0.257 |
| Rv2680_day32 | 2.658 | -1.501 |
| H37Rv_KO_MarP | 0.758 | 0.571 |
| hypoxia_3wks | -0.136 | -1.013 |
| hypoxia_6wks | -0.192 | 0.451 |
| glycerol | -0.042 | 0.082 |
| cholesterol | -0.77 | -0.284 |
| AJ | -0.032 | -0.943 |
| Bibs02 | -0.24 | -0.13 |
| Bibs02c | -0.477 | 0.706 |
| BL6 | -1.022 | -0.671 |
| BL6a | -0.555 | -0.245 |
| BXD01 | -0.768 | -0.792 |
| BXD010 | -1.419 | -3.192 |
| BXD011 | -0.663 | -1.591 |
| BXD03 | -0.952 | -1.056 |
| BXD04 | -0.775 | -0.913 |
| BXD05 | -1.204 | -0.22 |
| BXD06 | -0.435 | -0.949 |
| BXD07 | -1.09 | -1.101 |
| BXD08 | -0.195 | -0.329 |
| BXD09 | -0.61 | -1.341 |
| CAST | -0.374 | 0.227 |
| CCcont | -0.419 | -0.369 |
| DS01 | -0.327 | -0.33 |
| DS02 | -1.035 | 0.088 |
| DS04 | 0.878 | 1.578 |
| DS0c | -0.335 | -0.107 |
| GP01 | 0.59 | -0.785 |
| GP02 | -0.011 | -1.855 |
| GP0c | -0.538 | -0.907 |
| NOD | -0.796 | 0.397 |
| NZO | -0.027 | -0.042 |
| PWK | 0.129 | 0.105 |
| H37Rv_KO_CtpC | -1.402 | -2.645 |
| H37Rv_KO_CtpD | -0.659 | -0.302 |
| H37Rv_KO_Rv1272 | -0.059 | 0.617 |
| H37Rv_KO_SugABC | 0.109 | -0.465 |
| H37Rv_KO_MbtN | -0.858 | -1.019 |
| Trans05 | -0.77 | -2.639 |
| macrophage_unactivated | -0.404 | -0.054 |
| IL1 | -0.7 | -2.204 |
| Rapamycin | 0.043 | -0.316 |
| Tcell | -1.206 | -0.515 |
| GMCSF | 0.657 | -0.045 |
| IFNab | 0.357 | -0.366 |
| IFNg | -0.072 | -1.008 |
| IFNg_GMCSF1 | 0.6 | -0.437 |
| Rv1432_day32 | 0.635 | -0.318 |
| Rv1565c_day32 | -1.339 | -2.453 |
| secA2_input | 1.885 | 0.1 |
| delta_Rv3594 | 0.805 | 0.35 |
| delta_Rv3717 | 1.013 | -0.199 |
| delta_Rv3811 | 0.638 | -0.467 |
| delta_Rv0954 | -0.155 | 0.021 |
| PonA1 | 0.682 | -0.386 |
| EccD1_KO | 0.296 | 0.651 |
| EspI_KO | 0.402 | 1.012 |
| PE35_KO | 1.561 | 0.788 |
| PPE68_KO | 0.909 | 1.344 |
| glycerol2 | 0.43 | 1.08 |
| lignocerate | 0.414 | 1.595 |
| oleate | 0.235 | 0.183 |
| phosphatidylcholine | 0.232 | 1.112 |
| acetate | 0.085 | 1.026 |
| glucAc | 0.063 | 1.148 |
| Rv0950ko | -1.369 | -0.525 |
| Rv1096ko | -0.133 | 0.615 |
| Rv3684ko | -0.766 | -0.121 |
| delta_otsA_trehalose | -0.551 | -0.893 |