Top 10 genes with highest correlation to Rv0804/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2852c/mqo | (cc=0.4915) | info on Rv2852c/mqo |
| Rv1336/cysM | (cc=0.4614) | info on Rv1336/cysM |
| Rv0131c/fadE1 | (cc=0.4569) | info on Rv0131c/fadE1 |
| Rv2970c/lipN | (cc=0.4391) | info on Rv2970c/lipN |
| Rv3033/- | (cc=0.4344) | info on Rv3033/- |
| Rv1334/mec | (cc=0.4211) | info on Rv1334/mec |
| Rv2618/- | (cc=0.417) | info on Rv2618/- |
| Rv2450c/rpfE | (cc=0.4155) | info on Rv2450c/rpfE |
| Rv0695/- | (cc=0.3842) | info on Rv0695/- |
| Rv1666c/cyp139 | (cc=0.3822) | info on Rv1666c/cyp139 |
Correlation of Rv0804/- with Rv1334/mec
Normalized LFCs for Rv0804/-:
(description and provenance of datasets)
| Rv0804/- | Rv1334/mec | |
| Fe_supp_jason_reseq | -2.502 | -1.481 |
| low_pH_jason_reseq | 1.019 | -0.197 |
| NO_jason_reseq | -0.42 | 1.011 |
| B6_jason_reseq | 1.095 | -0.525 |
| MHCII_jason_reseq | -0.108 | -0.587 |
| Isoniazid02 | -0.39 | 1.746 |
| Rifampicin4 | -0.149 | 0.127 |
| Ethambutol3 | -0.137 | 0.078 |
| Meropenem3 | 0.032 | 0.642 |
| Vancomycin16 | 0.377 | 1.117 |
| Rv2680_day32 | 1.871 | 0.825 |
| H37Rv_KO_MarP | 0.109 | 0.268 |
| hypoxia_3wks | 1.575 | 1.826 |
| hypoxia_6wks | 2.007 | 2.462 |
| glycerol | 0.897 | 0.057 |
| cholesterol | 0.069 | 0.261 |
| AJ | -0.805 | -0.324 |
| Bibs02 | 0.172 | -0.542 |
| Bibs02c | -0.409 | 0.597 |
| BL6 | 0.694 | 0.722 |
| BL6a | 0.274 | 1.194 |
| BXD01 | 0.578 | 1.351 |
| BXD010 | 0.516 | 1.985 |
| BXD011 | 0.414 | 2.172 |
| BXD03 | 0.584 | 0.748 |
| BXD04 | 0.28 | 1.201 |
| BXD05 | 0.284 | 1.843 |
| BXD06 | 0.213 | 1.645 |
| BXD07 | 0.842 | 1.663 |
| BXD08 | 0.988 | 1.376 |
| BXD09 | 0.418 | 1.363 |
| CAST | -0.417 | -0.813 |
| CCcont | -0.544 | -0.134 |
| DS01 | -0.392 | -0.987 |
| DS02 | -0.195 | -1.089 |
| DS04 | 0.715 | -0.523 |
| DS0c | -0.225 | -0.137 |
| GP01 | -1.756 | 0.192 |
| GP02 | -1.818 | 0.74 |
| GP0c | -1.077 | 1.04 |
| NOD | -0.76 | 0.151 |
| NZO | -0.126 | 0.325 |
| PWK | -0.099 | -0.176 |
| H37Rv_KO_CtpC | -0.884 | -0.648 |
| H37Rv_KO_CtpD | -0.375 | -0.362 |
| H37Rv_KO_Rv1272 | -0.407 | 0.7 |
| H37Rv_KO_SugABC | 0.137 | 1.725 |
| H37Rv_KO_MbtN | 0.316 | 1.499 |
| Trans05 | 0.282 | 0.873 |
| macrophage_unactivated | -1.588 | -2.108 |
| IL1 | 0.537 | 1.356 |
| Rapamycin | -0.371 | -0.384 |
| Tcell | -0.45 | -0.609 |
| GMCSF | -0.341 | -1.04 |
| IFNab | 0.07 | 0.46 |
| IFNg | -0.021 | 0.182 |
| IFNg_GMCSF1 | 0.327 | 0.053 |
| Rv1432_day32 | 1.16 | 0.245 |
| Rv1565c_day32 | -1.749 | -0.828 |
| secA2_input | 0.368 | 0.204 |
| delta_Rv3594 | -0.84 | 0.704 |
| delta_Rv3717 | 0.609 | 2.015 |
| delta_Rv3811 | -0.538 | 1.691 |
| delta_Rv0954 | -1.107 | -0.207 |
| PonA1 | -1.146 | -0.103 |
| EccD1_KO | 0.724 | -0.957 |
| EspI_KO | 0.876 | -1.001 |
| PE35_KO | 0.242 | -1.149 |
| PPE68_KO | 0.208 | -1.085 |
| glycerol2 | -0.032 | -0.82 |
| lignocerate | -0.555 | -2.169 |
| oleate | 1.46 | 1.965 |
| phosphatidylcholine | -0.294 | -1.476 |
| acetate | 0.575 | -0.755 |
| glucAc | -1.382 | -0.862 |
| Rv0950ko | 0.519 | -0.473 |
| Rv1096ko | 0.688 | 0.03 |
| Rv3684ko | 0.147 | 0.321 |
| delta_otsA_trehalose | 0.17 | 0.117 |