TnSeqCorr

Top 10 genes with highest correlation to Rv0675/echA5:

update plotcorrelationlink to info on gene
Rv0741/- (cc=0.4919) info on Rv0741/-
Rv1120c/- (cc=0.4732) info on Rv1120c/-
Rv3038c/- (cc=0.4511) info on Rv3038c/-
Rv0113/gmhA (cc=0.4505) info on Rv0113/gmhA
Rv1734c/- (cc=0.4447) info on Rv1734c/-
Rv0737/- (cc=0.4442) info on Rv0737/-
Rv3431c/- (cc=0.4352) info on Rv3431c/-
Rv3163c/- (cc=0.4319) info on Rv3163c/-
Rv2174/mptA (cc=0.4228) info on Rv2174/mptA
Rv0219/- (cc=0.4194) info on Rv0219/-

Correlation of Rv0675/echA5 with Rv0741/-

Normalized LFCs for Rv0675/echA5:
(description and provenance of datasets)
Rv0675/echA5Rv0741/-
Fe_supp_jason_reseq

-0.901

-1.645

low_pH_jason_reseq

-3.001

-1.392

NO_jason_reseq

0.541

-0.184

B6_jason_reseq

-0.342

0.28

MHCII_jason_reseq

2.09

1.927

Isoniazid02

0.298

0.356

Rifampicin4

0.263

0.114

Ethambutol3

0.024

0.865

Meropenem3

-0.315

0.448

Vancomycin16

0.207

0.22

Rv2680_day32

0.439

-0.775

H37Rv_KO_MarP

0.446

0.257

hypoxia_3wks

0.598

0.53

hypoxia_6wks

-0.457

-0.28

glycerol

-2.319

-0.448

cholesterol

-2.408

0.979

AJ

-1.867

0.108

Bibs02

-2.874

-3.164

Bibs02c

1.92

-2.383

BL6

-2.205

-3.01

BL6a

0.567

-1.761

BXD01

-0.443

-0.655

BXD010

-0.7

-2.499

BXD011

-1.322

-0.546

BXD03

-2.126

-0.208

BXD04

-1.493

-1.099

BXD05

-0.692

0.025

BXD06

-1.612

-1.186

BXD07

-1.174

-2.467

BXD08

-0.452

-1.902

BXD09

-1.881

-1.64

CAST

0.759

1.004

CCcont

-2.347

-3.594

DS01

-0.24

-0.636

DS02

0.239

0.02

DS04

-2.228

-0.523

DS0c

0.0

-1.057

GP01

-1.393

-2.376

GP02

1.173

-0.357

GP0c

-1.159

-1.811

NOD

-0.763

0.696

NZO

-1.296

1.948

PWK

-0.374

0.689

H37Rv_KO_CtpC

-1.056

-0.341

H37Rv_KO_CtpD

0.204

-1.307

H37Rv_KO_Rv1272

-2.486

-0.845

H37Rv_KO_SugABC

-1.647

-2.384

H37Rv_KO_MbtN

-0.35

0.01

Trans05

-2.172

-1.918

macrophage_unactivated

-1.016

-2.683

IL1

-2.797

-3.542

Rapamycin

-4.057

-2.477

Tcell

-0.6

-2.046

GMCSF

-0.85

-5.65

IFNab

-0.973

-4.979

IFNg

-1.97

-3.421

IFNg_GMCSF1

-2.024

-2.033

Rv1432_day32

-0.271

0.039

Rv1565c_day32

-1.535

-1.638

secA2_input

1.032

0.712

delta_Rv3594

3.006

2.195

delta_Rv3717

1.845

-0.399

delta_Rv3811

-0.583

0.25

delta_Rv0954

-0.506

-0.047

PonA1

3.098

1.903

EccD1_KO

-0.822

-1.796

EspI_KO

-3.679

-2.493

PE35_KO

-0.846

-1.902

PPE68_KO

-0.214

-2.851

glycerol2

-0.231

-0.354

lignocerate

-1.782

-1.353

oleate

0.588

0.221

phosphatidylcholine

-1.006

0.157

acetate

0.136

1.009

glucAc

-3.463

-4.028

Rv0950ko

-1.493

-0.09

Rv1096ko

-1.113

2.832

Rv3684ko

-3.124

-0.802

delta_otsA_trehalose

0.09

-0.704