Top 10 genes with highest correlation to Rv0553/menC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0022c/whiB5 | (cc=0.4583) | info on Rv0022c/whiB5 |
| Rv0360c/- | (cc=0.4367) | info on Rv0360c/- |
| Rv0347/- | (cc=0.4288) | info on Rv0347/- |
| Rv3839/- | (cc=0.4161) | info on Rv3839/- |
| Rv0414c/thiE | (cc=0.4155) | info on Rv0414c/thiE |
| Rv2450c/rpfE | (cc=0.4146) | info on Rv2450c/rpfE |
| Rv0551c/fadD8 | (cc=0.4142) | info on Rv0551c/fadD8 |
| Rv1982A/vapB36 | (cc=0.408) | info on Rv1982A/vapB36 |
| Rv3103c/- | (cc=0.4078) | info on Rv3103c/- |
| Rv3392c/cmaA1 | (cc=0.4076) | info on Rv3392c/cmaA1 |
Correlation of Rv0553/menC with Rv2450c/rpfE
Normalized LFCs for Rv0553/menC:
(description and provenance of datasets)
| Rv0553/menC | Rv2450c/rpfE | |
| Fe_supp_jason_reseq | -0.706 | -1.373 |
| low_pH_jason_reseq | 1.233 | 0.793 |
| NO_jason_reseq | -0.399 | 1.704 |
| B6_jason_reseq | 0.752 | 0.259 |
| MHCII_jason_reseq | 1.469 | -0.51 |
| Isoniazid02 | 0.127 | 0.492 |
| Rifampicin4 | -1.124 | 1.08 |
| Ethambutol3 | -0.365 | 0.612 |
| Meropenem3 | 0.0 | 0.507 |
| Vancomycin16 | -0.512 | 1.027 |
| Rv2680_day32 | 0.0 | 0.404 |
| H37Rv_KO_MarP | -0.214 | -0.643 |
| hypoxia_3wks | 0.0 | 0.817 |
| hypoxia_6wks | 2.005 | 2.13 |
| glycerol | 0.108 | -0.022 |
| cholesterol | 0.64 | 0.015 |
| AJ | 0.516 | -0.203 |
| Bibs02 | -1.653 | 0.907 |
| Bibs02c | -0.058 | 0.738 |
| BL6 | 1.098 | 0.532 |
| BL6a | 0.98 | 0.362 |
| BXD01 | 0.346 | -0.077 |
| BXD010 | 1.783 | 0.816 |
| BXD011 | 1.415 | -0.156 |
| BXD03 | 2.032 | 0.229 |
| BXD04 | 0.219 | 0.95 |
| BXD05 | -0.38 | 0.475 |
| BXD06 | 0.791 | 0.244 |
| BXD07 | 0.708 | -0.153 |
| BXD08 | 0.588 | 0.994 |
| BXD09 | 0.313 | -0.591 |
| CAST | 0.661 | 0.839 |
| CCcont | -0.926 | -1.154 |
| DS01 | -0.424 | -0.618 |
| DS02 | -1.141 | -0.569 |
| DS04 | 1.21 | 0.166 |
| DS0c | -0.462 | -1.185 |
| GP01 | -1.378 | -1.918 |
| GP02 | -0.932 | 0.087 |
| GP0c | -1.684 | -0.122 |
| NOD | 0.737 | 1.108 |
| NZO | -1.139 | 0.355 |
| PWK | 0.794 | 1.287 |
| H37Rv_KO_CtpC | -1.469 | -1.256 |
| H37Rv_KO_CtpD | -1.526 | -0.965 |
| H37Rv_KO_Rv1272 | -1.968 | -0.436 |
| H37Rv_KO_SugABC | -1.283 | 1.371 |
| H37Rv_KO_MbtN | -0.291 | -1.095 |
| Trans05 | -1.692 | -0.021 |
| macrophage_unactivated | -1.31 | -1.793 |
| IL1 | -1.528 | -1.068 |
| Rapamycin | -0.592 | -0.881 |
| Tcell | -1.512 | -0.14 |
| GMCSF | -0.734 | -0.731 |
| IFNab | -0.339 | -1.391 |
| IFNg | -0.516 | -1.387 |
| IFNg_GMCSF1 | -0.735 | -1.483 |
| Rv1432_day32 | 0.0 | -0.202 |
| Rv1565c_day32 | -0.905 | 0.201 |
| secA2_input | -0.362 | -0.789 |
| delta_Rv3594 | 1.366 | -0.392 |
| delta_Rv3717 | 0.555 | 0.326 |
| delta_Rv3811 | -0.721 | 0.291 |
| delta_Rv0954 | 2.048 | 0.36 |
| PonA1 | 0.223 | -0.18 |
| EccD1_KO | -0.605 | 0.0 |
| EspI_KO | 1.831 | 1.48 |
| PE35_KO | -1.155 | 0.274 |
| PPE68_KO | -1.03 | -0.566 |
| glycerol2 | -1.618 | 0.015 |
| lignocerate | -1.329 | 0.168 |
| oleate | -1.004 | 1.113 |
| phosphatidylcholine | -1.528 | -0.146 |
| acetate | -1.342 | 0.126 |
| glucAc | -1.868 | -0.17 |
| Rv0950ko | 1.668 | 1.095 |
| Rv1096ko | 2.223 | 0.504 |
| Rv3684ko | 2.6 | 0.917 |
| delta_otsA_trehalose | 2.397 | 0.711 |