Top 10 genes with highest correlation to Rv0553/menC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0022c/whiB5 | (cc=0.4583) | info on Rv0022c/whiB5 |
| Rv0360c/- | (cc=0.4367) | info on Rv0360c/- |
| Rv0347/- | (cc=0.4288) | info on Rv0347/- |
| Rv3839/- | (cc=0.4161) | info on Rv3839/- |
| Rv0414c/thiE | (cc=0.4155) | info on Rv0414c/thiE |
| Rv2450c/rpfE | (cc=0.4146) | info on Rv2450c/rpfE |
| Rv0551c/fadD8 | (cc=0.4142) | info on Rv0551c/fadD8 |
| Rv1982A/vapB36 | (cc=0.408) | info on Rv1982A/vapB36 |
| Rv3103c/- | (cc=0.4078) | info on Rv3103c/- |
| Rv3392c/cmaA1 | (cc=0.4076) | info on Rv3392c/cmaA1 |
Correlation of Rv0553/menC with Rv0414c/thiE
Normalized LFCs for Rv0553/menC:
(description and provenance of datasets)
| Rv0553/menC | Rv0414c/thiE | |
| Fe_supp_jason_reseq | -0.706 | 0.923 |
| low_pH_jason_reseq | 1.233 | -0.811 |
| NO_jason_reseq | -0.399 | 0.0 |
| B6_jason_reseq | 0.752 | -0.538 |
| MHCII_jason_reseq | 1.469 | -0.105 |
| Isoniazid02 | 0.127 | 0.604 |
| Rifampicin4 | -1.124 | 1.362 |
| Ethambutol3 | -0.365 | 0.27 |
| Meropenem3 | 0.0 | 0.386 |
| Vancomycin16 | -0.512 | 0.0 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.214 | 0.299 |
| hypoxia_3wks | 0.0 | -0.327 |
| hypoxia_6wks | 2.005 | 3.197 |
| glycerol | 0.108 | 1.147 |
| cholesterol | 0.64 | 1.577 |
| AJ | 0.516 | 1.239 |
| Bibs02 | -1.653 | -1.123 |
| Bibs02c | -0.058 | 1.801 |
| BL6 | 1.098 | 0.0 |
| BL6a | 0.98 | 2.197 |
| BXD01 | 0.346 | 0.334 |
| BXD010 | 1.783 | 1.256 |
| BXD011 | 1.415 | -0.157 |
| BXD03 | 2.032 | -0.258 |
| BXD04 | 0.219 | 0.317 |
| BXD05 | -0.38 | 1.67 |
| BXD06 | 0.791 | 0.713 |
| BXD07 | 0.708 | 0.355 |
| BXD08 | 0.588 | 0.614 |
| BXD09 | 0.313 | 0.798 |
| CAST | 0.661 | -0.606 |
| CCcont | -0.926 | -0.089 |
| DS01 | -0.424 | -0.45 |
| DS02 | -1.141 | -1.336 |
| DS04 | 1.21 | 2.867 |
| DS0c | -0.462 | -1.332 |
| GP01 | -1.378 | -0.607 |
| GP02 | -0.932 | -0.428 |
| GP0c | -1.684 | -0.799 |
| NOD | 0.737 | -0.428 |
| NZO | -1.139 | 0.512 |
| PWK | 0.794 | -0.666 |
| H37Rv_KO_CtpC | -1.469 | 0.81 |
| H37Rv_KO_CtpD | -1.526 | -0.651 |
| H37Rv_KO_Rv1272 | -1.968 | -0.598 |
| H37Rv_KO_SugABC | -1.283 | -0.608 |
| H37Rv_KO_MbtN | -0.291 | -0.061 |
| Trans05 | -1.692 | -0.672 |
| macrophage_unactivated | -1.31 | -1.644 |
| IL1 | -1.528 | 0.252 |
| Rapamycin | -0.592 | -0.276 |
| Tcell | -1.512 | -0.945 |
| GMCSF | -0.734 | 0.636 |
| IFNab | -0.339 | 0.381 |
| IFNg | -0.516 | 0.837 |
| IFNg_GMCSF1 | -0.735 | -1.26 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.905 | 0.0 |
| secA2_input | -0.362 | -1.234 |
| delta_Rv3594 | 1.366 | 0.268 |
| delta_Rv3717 | 0.555 | -0.39 |
| delta_Rv3811 | -0.721 | 0.437 |
| delta_Rv0954 | 2.048 | -1.233 |
| PonA1 | 0.223 | -1.884 |
| EccD1_KO | -0.605 | 1.635 |
| EspI_KO | 1.831 | 2.199 |
| PE35_KO | -1.155 | 1.272 |
| PPE68_KO | -1.03 | 0.512 |
| glycerol2 | -1.618 | -1.073 |
| lignocerate | -1.329 | -0.613 |
| oleate | -1.004 | -1.086 |
| phosphatidylcholine | -1.528 | -1.073 |
| acetate | -1.342 | -1.044 |
| glucAc | -1.868 | 0.451 |
| Rv0950ko | 1.668 | 1.122 |
| Rv1096ko | 2.223 | 0.92 |
| Rv3684ko | 2.6 | 3.134 |
| delta_otsA_trehalose | 2.397 | 0.0 |