Top 10 genes with highest correlation to Rv0553/menC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0022c/whiB5 | (cc=0.4583) | info on Rv0022c/whiB5 |
| Rv0360c/- | (cc=0.4367) | info on Rv0360c/- |
| Rv0347/- | (cc=0.4288) | info on Rv0347/- |
| Rv3839/- | (cc=0.4161) | info on Rv3839/- |
| Rv0414c/thiE | (cc=0.4155) | info on Rv0414c/thiE |
| Rv2450c/rpfE | (cc=0.4146) | info on Rv2450c/rpfE |
| Rv0551c/fadD8 | (cc=0.4142) | info on Rv0551c/fadD8 |
| Rv1982A/vapB36 | (cc=0.408) | info on Rv1982A/vapB36 |
| Rv3103c/- | (cc=0.4078) | info on Rv3103c/- |
| Rv3392c/cmaA1 | (cc=0.4076) | info on Rv3392c/cmaA1 |
Correlation of Rv0553/menC with Rv0347/-
Normalized LFCs for Rv0553/menC:
(description and provenance of datasets)
| Rv0553/menC | Rv0347/- | |
| Fe_supp_jason_reseq | -0.706 | -0.63 |
| low_pH_jason_reseq | 1.233 | -1.29 |
| NO_jason_reseq | -0.399 | 0.129 |
| B6_jason_reseq | 0.752 | 1.434 |
| MHCII_jason_reseq | 1.469 | 0.048 |
| Isoniazid02 | 0.127 | 1.582 |
| Rifampicin4 | -1.124 | -0.165 |
| Ethambutol3 | -0.365 | 1.39 |
| Meropenem3 | 0.0 | -0.151 |
| Vancomycin16 | -0.512 | 0.589 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.214 | 0.535 |
| hypoxia_3wks | 0.0 | -0.255 |
| hypoxia_6wks | 2.005 | 0.251 |
| glycerol | 0.108 | 1.191 |
| cholesterol | 0.64 | 0.568 |
| AJ | 0.516 | 0.212 |
| Bibs02 | -1.653 | 0.717 |
| Bibs02c | -0.058 | -0.359 |
| BL6 | 1.098 | 1.056 |
| BL6a | 0.98 | -1.036 |
| BXD01 | 0.346 | -0.751 |
| BXD010 | 1.783 | -0.67 |
| BXD011 | 1.415 | 0.0 |
| BXD03 | 2.032 | -1.115 |
| BXD04 | 0.219 | -0.713 |
| BXD05 | -0.38 | -0.776 |
| BXD06 | 0.791 | -0.043 |
| BXD07 | 0.708 | 0.383 |
| BXD08 | 0.588 | -0.696 |
| BXD09 | 0.313 | -0.735 |
| CAST | 0.661 | -0.15 |
| CCcont | -0.926 | -0.372 |
| DS01 | -0.424 | -0.236 |
| DS02 | -1.141 | 1.282 |
| DS04 | 1.21 | -0.062 |
| DS0c | -0.462 | -0.456 |
| GP01 | -1.378 | -0.031 |
| GP02 | -0.932 | -0.527 |
| GP0c | -1.684 | -0.551 |
| NOD | 0.737 | -1.061 |
| NZO | -1.139 | 0.737 |
| PWK | 0.794 | -0.264 |
| H37Rv_KO_CtpC | -1.469 | -1.456 |
| H37Rv_KO_CtpD | -1.526 | -1.454 |
| H37Rv_KO_Rv1272 | -1.968 | -1.759 |
| H37Rv_KO_SugABC | -1.283 | -1.137 |
| H37Rv_KO_MbtN | -0.291 | -1.089 |
| Trans05 | -1.692 | -0.988 |
| macrophage_unactivated | -1.31 | -1.016 |
| IL1 | -1.528 | -0.611 |
| Rapamycin | -0.592 | -0.632 |
| Tcell | -1.512 | -0.16 |
| GMCSF | -0.734 | 0.364 |
| IFNab | -0.339 | 0.142 |
| IFNg | -0.516 | 0.0 |
| IFNg_GMCSF1 | -0.735 | 0.0 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.905 | 1.579 |
| secA2_input | -0.362 | 0.606 |
| delta_Rv3594 | 1.366 | 0.788 |
| delta_Rv3717 | 0.555 | -0.438 |
| delta_Rv3811 | -0.721 | 0.287 |
| delta_Rv0954 | 2.048 | 0.0 |
| PonA1 | 0.223 | 0.323 |
| EccD1_KO | -0.605 | -0.145 |
| EspI_KO | 1.831 | -0.53 |
| PE35_KO | -1.155 | -1.003 |
| PPE68_KO | -1.03 | -1.469 |
| glycerol2 | -1.618 | -0.88 |
| lignocerate | -1.329 | -0.471 |
| oleate | -1.004 | -0.89 |
| phosphatidylcholine | -1.528 | -0.704 |
| acetate | -1.342 | -0.836 |
| glucAc | -1.868 | 0.0 |
| Rv0950ko | 1.668 | 1.848 |
| Rv1096ko | 2.223 | 3.384 |
| Rv3684ko | 2.6 | 3.674 |
| delta_otsA_trehalose | 2.397 | 2.561 |