Top 10 genes with highest correlation to Rv0508/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.6807) | info on Rv3421c/- |
| Rv1100/- | (cc=0.6165) | info on Rv1100/- |
| Rv2793c/truB | (cc=0.6004) | info on Rv2793c/truB |
| Rv0668/rpoC | (cc=0.5821) | info on Rv0668/rpoC |
| Rv1072/- | (cc=0.581) | info on Rv1072/- |
| Rv0055/rpsR1 | (cc=0.579) | info on Rv0055/rpsR1 |
| Rv3419c/gcp | (cc=0.5721) | info on Rv3419c/gcp |
| Rv1604/impA | (cc=0.5703) | info on Rv1604/impA |
| Rv1239c/corA | (cc=0.5412) | info on Rv1239c/corA |
| Rv3146/nuoB | (cc=0.5386) | info on Rv3146/nuoB |
Correlation of Rv0508/- with Rv1239c/corA
Normalized LFCs for Rv0508/-:
(description and provenance of datasets)
| Rv0508/- | Rv1239c/corA | |
| Fe_supp_jason_reseq | -0.597 | -0.69 |
| low_pH_jason_reseq | 0.888 | 1.064 |
| NO_jason_reseq | -0.034 | 1.433 |
| B6_jason_reseq | -0.166 | 0.087 |
| MHCII_jason_reseq | -2.182 | -1.266 |
| Isoniazid02 | -1.43 | 0.036 |
| Rifampicin4 | 1.928 | -0.625 |
| Ethambutol3 | -0.213 | 0.0 |
| Meropenem3 | -0.108 | -1.067 |
| Vancomycin16 | -0.212 | -0.459 |
| Rv2680_day32 | -0.264 | 0.318 |
| H37Rv_KO_MarP | -0.011 | 0.505 |
| hypoxia_3wks | -0.65 | -2.117 |
| hypoxia_6wks | 1.157 | 0.848 |
| glycerol | 0.436 | 0.984 |
| cholesterol | 0.016 | 0.04 |
| AJ | -0.815 | 1.869 |
| Bibs02 | -0.922 | -0.338 |
| Bibs02c | 0.749 | -0.69 |
| BL6 | 1.045 | 1.43 |
| BL6a | 0.633 | 2.099 |
| BXD01 | 1.28 | 2.917 |
| BXD010 | 1.412 | 2.38 |
| BXD011 | 1.732 | 3.779 |
| BXD03 | 1.05 | 2.051 |
| BXD04 | 1.956 | 3.404 |
| BXD05 | 1.179 | 2.764 |
| BXD06 | 1.882 | 3.273 |
| BXD07 | 1.13 | 2.452 |
| BXD08 | 1.647 | 3.451 |
| BXD09 | 0.58 | 2.319 |
| CAST | 0.833 | 3.712 |
| CCcont | 0.303 | 0.288 |
| DS01 | 0.659 | -0.732 |
| DS02 | 0.241 | -1.182 |
| DS04 | -0.386 | 0.132 |
| DS0c | -1.948 | -0.757 |
| GP01 | -0.951 | -0.288 |
| GP02 | 0.6 | 0.034 |
| GP0c | -1.252 | 0.251 |
| NOD | 0.436 | 1.23 |
| NZO | -0.022 | 2.164 |
| PWK | 0.664 | 4.489 |
| H37Rv_KO_CtpC | 1.392 | 0.494 |
| H37Rv_KO_CtpD | 0.9 | 1.213 |
| H37Rv_KO_Rv1272 | 0.393 | 1.06 |
| H37Rv_KO_SugABC | 0.901 | 1.269 |
| H37Rv_KO_MbtN | 1.748 | 0.732 |
| Trans05 | 0.38 | 1.737 |
| macrophage_unactivated | -1.023 | -2.257 |
| IL1 | -1.916 | -1.0 |
| Rapamycin | -2.053 | -2.427 |
| Tcell | 0.417 | 0.596 |
| GMCSF | 0.444 | -0.694 |
| IFNab | 0.133 | -2.013 |
| IFNg | -0.51 | -1.505 |
| IFNg_GMCSF1 | -0.874 | -2.017 |
| Rv1432_day32 | 0.125 | 0.731 |
| Rv1565c_day32 | -1.185 | -1.311 |
| secA2_input | -0.238 | -0.377 |
| delta_Rv3594 | -2.065 | -0.234 |
| delta_Rv3717 | -1.448 | 0.766 |
| delta_Rv3811 | -0.33 | -1.084 |
| delta_Rv0954 | -0.698 | -0.596 |
| PonA1 | -0.612 | 0.792 |
| EccD1_KO | 0.382 | -0.72 |
| EspI_KO | 0.222 | -0.941 |
| PE35_KO | -0.7 | -0.998 |
| PPE68_KO | 0.086 | -0.893 |
| glycerol2 | -0.132 | -1.449 |
| lignocerate | 0.402 | -2.954 |
| oleate | -0.17 | -2.884 |
| phosphatidylcholine | 0.543 | -2.578 |
| acetate | 0.12 | -0.785 |
| glucAc | -0.034 | -1.674 |
| Rv0950ko | 0.268 | 1.447 |
| Rv1096ko | -0.642 | 0.072 |
| Rv3684ko | -0.747 | 1.601 |
| delta_otsA_trehalose | 0.493 | 0.147 |