Top 10 genes with highest correlation to Rv0508/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.6807) | info on Rv3421c/- |
| Rv1100/- | (cc=0.6165) | info on Rv1100/- |
| Rv2793c/truB | (cc=0.6004) | info on Rv2793c/truB |
| Rv0668/rpoC | (cc=0.5821) | info on Rv0668/rpoC |
| Rv1072/- | (cc=0.581) | info on Rv1072/- |
| Rv0055/rpsR1 | (cc=0.579) | info on Rv0055/rpsR1 |
| Rv3419c/gcp | (cc=0.5721) | info on Rv3419c/gcp |
| Rv1604/impA | (cc=0.5703) | info on Rv1604/impA |
| Rv1239c/corA | (cc=0.5412) | info on Rv1239c/corA |
| Rv3146/nuoB | (cc=0.5386) | info on Rv3146/nuoB |
Correlation of Rv0508/- with Rv1072/-
Normalized LFCs for Rv0508/-:
(description and provenance of datasets)
| Rv0508/- | Rv1072/- | |
| Fe_supp_jason_reseq | -0.597 | 3.452 |
| low_pH_jason_reseq | 0.888 | 0.709 |
| NO_jason_reseq | -0.034 | -0.205 |
| B6_jason_reseq | -0.166 | 1.58 |
| MHCII_jason_reseq | -2.182 | 0.0 |
| Isoniazid02 | -1.43 | -2.007 |
| Rifampicin4 | 1.928 | -0.653 |
| Ethambutol3 | -0.213 | 3.263 |
| Meropenem3 | -0.108 | 0.586 |
| Vancomycin16 | -0.212 | -0.727 |
| Rv2680_day32 | -0.264 | -0.803 |
| H37Rv_KO_MarP | -0.011 | -2.718 |
| hypoxia_3wks | -0.65 | 0.0 |
| hypoxia_6wks | 1.157 | 1.451 |
| glycerol | 0.436 | 0.089 |
| cholesterol | 0.016 | -1.261 |
| AJ | -0.815 | 0.948 |
| Bibs02 | -0.922 | 0.747 |
| Bibs02c | 0.749 | 0.653 |
| BL6 | 1.045 | 2.081 |
| BL6a | 0.633 | 1.728 |
| BXD01 | 1.28 | 3.146 |
| BXD010 | 1.412 | 2.277 |
| BXD011 | 1.732 | 3.036 |
| BXD03 | 1.05 | 2.899 |
| BXD04 | 1.956 | 5.696 |
| BXD05 | 1.179 | 2.5 |
| BXD06 | 1.882 | 2.909 |
| BXD07 | 1.13 | 2.518 |
| BXD08 | 1.647 | 3.668 |
| BXD09 | 0.58 | 1.736 |
| CAST | 0.833 | 4.513 |
| CCcont | 0.303 | 2.429 |
| DS01 | 0.659 | 0.965 |
| DS02 | 0.241 | 0.821 |
| DS04 | -0.386 | 0.793 |
| DS0c | -1.948 | 0.748 |
| GP01 | -0.951 | 0.0 |
| GP02 | 0.6 | -0.166 |
| GP0c | -1.252 | -0.26 |
| NOD | 0.436 | 1.87 |
| NZO | -0.022 | 0.815 |
| PWK | 0.664 | 2.865 |
| H37Rv_KO_CtpC | 1.392 | 3.557 |
| H37Rv_KO_CtpD | 0.9 | 1.054 |
| H37Rv_KO_Rv1272 | 0.393 | 1.837 |
| H37Rv_KO_SugABC | 0.901 | 1.948 |
| H37Rv_KO_MbtN | 1.748 | 2.179 |
| Trans05 | 0.38 | 2.15 |
| macrophage_unactivated | -1.023 | -1.13 |
| IL1 | -1.916 | -1.949 |
| Rapamycin | -2.053 | -2.961 |
| Tcell | 0.417 | 1.466 |
| GMCSF | 0.444 | -1.191 |
| IFNab | 0.133 | 0.0 |
| IFNg | -0.51 | -1.756 |
| IFNg_GMCSF1 | -0.874 | -0.465 |
| Rv1432_day32 | 0.125 | -0.887 |
| Rv1565c_day32 | -1.185 | 0.401 |
| secA2_input | -0.238 | 1.079 |
| delta_Rv3594 | -2.065 | -0.846 |
| delta_Rv3717 | -1.448 | -2.079 |
| delta_Rv3811 | -0.33 | -0.717 |
| delta_Rv0954 | -0.698 | -2.135 |
| PonA1 | -0.612 | -1.272 |
| EccD1_KO | 0.382 | 1.312 |
| EspI_KO | 0.222 | 1.041 |
| PE35_KO | -0.7 | 0.306 |
| PPE68_KO | 0.086 | 0.653 |
| glycerol2 | -0.132 | -0.451 |
| lignocerate | 0.402 | -0.897 |
| oleate | -0.17 | -0.588 |
| phosphatidylcholine | 0.543 | -1.207 |
| acetate | 0.12 | -0.535 |
| glucAc | -0.034 | 0.554 |
| Rv0950ko | 0.268 | 0.28 |
| Rv1096ko | -0.642 | 2.524 |
| Rv3684ko | -0.747 | 2.6 |
| delta_otsA_trehalose | 0.493 | -1.013 |