Top 10 genes with highest correlation to Rv0508/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.6807) | info on Rv3421c/- |
| Rv1100/- | (cc=0.6165) | info on Rv1100/- |
| Rv2793c/truB | (cc=0.6004) | info on Rv2793c/truB |
| Rv0668/rpoC | (cc=0.5821) | info on Rv0668/rpoC |
| Rv1072/- | (cc=0.581) | info on Rv1072/- |
| Rv0055/rpsR1 | (cc=0.579) | info on Rv0055/rpsR1 |
| Rv3419c/gcp | (cc=0.5721) | info on Rv3419c/gcp |
| Rv1604/impA | (cc=0.5703) | info on Rv1604/impA |
| Rv1239c/corA | (cc=0.5412) | info on Rv1239c/corA |
| Rv3146/nuoB | (cc=0.5386) | info on Rv3146/nuoB |
Correlation of Rv0508/- with Rv0055/rpsR1
Normalized LFCs for Rv0508/-:
(description and provenance of datasets)
| Rv0508/- | Rv0055/rpsR1 | |
| Fe_supp_jason_reseq | -0.597 | -1.37 |
| low_pH_jason_reseq | 0.888 | 3.369 |
| NO_jason_reseq | -0.034 | 2.57 |
| B6_jason_reseq | -0.166 | -0.657 |
| MHCII_jason_reseq | -2.182 | 1.143 |
| Isoniazid02 | -1.43 | 2.663 |
| Rifampicin4 | 1.928 | 0.902 |
| Ethambutol3 | -0.213 | -0.441 |
| Meropenem3 | -0.108 | 0.763 |
| Vancomycin16 | -0.212 | -0.294 |
| Rv2680_day32 | -0.264 | 0.109 |
| H37Rv_KO_MarP | -0.011 | -1.325 |
| hypoxia_3wks | -0.65 | -0.678 |
| hypoxia_6wks | 1.157 | 0.084 |
| glycerol | 0.436 | 0.97 |
| cholesterol | 0.016 | -0.276 |
| AJ | -0.815 | 0.983 |
| Bibs02 | -0.922 | 0.0 |
| Bibs02c | 0.749 | 0.336 |
| BL6 | 1.045 | 3.526 |
| BL6a | 0.633 | 3.297 |
| BXD01 | 1.28 | 5.013 |
| BXD010 | 1.412 | 4.197 |
| BXD011 | 1.732 | 5.786 |
| BXD03 | 1.05 | 3.889 |
| BXD04 | 1.956 | 6.0 |
| BXD05 | 1.179 | 4.896 |
| BXD06 | 1.882 | 4.527 |
| BXD07 | 1.13 | 4.203 |
| BXD08 | 1.647 | 5.838 |
| BXD09 | 0.58 | 4.442 |
| CAST | 0.833 | 3.287 |
| CCcont | 0.303 | 3.633 |
| DS01 | 0.659 | 1.381 |
| DS02 | 0.241 | 0.181 |
| DS04 | -0.386 | -0.177 |
| DS0c | -1.948 | 0.0 |
| GP01 | -0.951 | -0.188 |
| GP02 | 0.6 | 0.0 |
| GP0c | -1.252 | -0.248 |
| NOD | 0.436 | 3.817 |
| NZO | -0.022 | -0.182 |
| PWK | 0.664 | 3.083 |
| H37Rv_KO_CtpC | 1.392 | 1.611 |
| H37Rv_KO_CtpD | 0.9 | 1.594 |
| H37Rv_KO_Rv1272 | 0.393 | 2.661 |
| H37Rv_KO_SugABC | 0.901 | -0.189 |
| H37Rv_KO_MbtN | 1.748 | 1.153 |
| Trans05 | 0.38 | 3.074 |
| macrophage_unactivated | -1.023 | 0.0 |
| IL1 | -1.916 | -0.54 |
| Rapamycin | -2.053 | -0.077 |
| Tcell | 0.417 | 1.717 |
| GMCSF | 0.444 | -1.677 |
| IFNab | 0.133 | -0.076 |
| IFNg | -0.51 | -1.31 |
| IFNg_GMCSF1 | -0.874 | -2.916 |
| Rv1432_day32 | 0.125 | 0.0 |
| Rv1565c_day32 | -1.185 | -0.415 |
| secA2_input | -0.238 | 0.997 |
| delta_Rv3594 | -2.065 | -0.812 |
| delta_Rv3717 | -1.448 | -4.252 |
| delta_Rv3811 | -0.33 | -0.106 |
| delta_Rv0954 | -0.698 | -4.366 |
| PonA1 | -0.612 | -1.721 |
| EccD1_KO | 0.382 | -2.578 |
| EspI_KO | 0.222 | 0.0 |
| PE35_KO | -0.7 | 0.134 |
| PPE68_KO | 0.086 | 0.941 |
| glycerol2 | -0.132 | 2.948 |
| lignocerate | 0.402 | 3.955 |
| oleate | -0.17 | -1.418 |
| phosphatidylcholine | 0.543 | 3.751 |
| acetate | 0.12 | 4.357 |
| glucAc | -0.034 | 3.813 |
| Rv0950ko | 0.268 | -0.944 |
| Rv1096ko | -0.642 | -1.08 |
| Rv3684ko | -0.747 | 2.391 |
| delta_otsA_trehalose | 0.493 | 0.0 |