Top 10 genes with highest correlation to Rv0508/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.6807) | info on Rv3421c/- |
| Rv1100/- | (cc=0.6165) | info on Rv1100/- |
| Rv2793c/truB | (cc=0.6004) | info on Rv2793c/truB |
| Rv0668/rpoC | (cc=0.5821) | info on Rv0668/rpoC |
| Rv1072/- | (cc=0.581) | info on Rv1072/- |
| Rv0055/rpsR1 | (cc=0.579) | info on Rv0055/rpsR1 |
| Rv3419c/gcp | (cc=0.5721) | info on Rv3419c/gcp |
| Rv1604/impA | (cc=0.5703) | info on Rv1604/impA |
| Rv1239c/corA | (cc=0.5412) | info on Rv1239c/corA |
| Rv3146/nuoB | (cc=0.5386) | info on Rv3146/nuoB |
Correlation of Rv0508/- with Rv3421c/-
Normalized LFCs for Rv0508/-:
(description and provenance of datasets)
| Rv0508/- | Rv3421c/- | |
| Fe_supp_jason_reseq | -0.597 | -1.268 |
| low_pH_jason_reseq | 0.888 | 0.157 |
| NO_jason_reseq | -0.034 | 2.221 |
| B6_jason_reseq | -0.166 | 0.53 |
| MHCII_jason_reseq | -2.182 | -2.712 |
| Isoniazid02 | -1.43 | -0.201 |
| Rifampicin4 | 1.928 | 2.134 |
| Ethambutol3 | -0.213 | 1.135 |
| Meropenem3 | -0.108 | 0.648 |
| Vancomycin16 | -0.212 | 0.923 |
| Rv2680_day32 | -0.264 | 0.05 |
| H37Rv_KO_MarP | -0.011 | 1.008 |
| hypoxia_3wks | -0.65 | -1.224 |
| hypoxia_6wks | 1.157 | -0.411 |
| glycerol | 0.436 | 1.279 |
| cholesterol | 0.016 | -0.89 |
| AJ | -0.815 | 0.698 |
| Bibs02 | -0.922 | 0.103 |
| Bibs02c | 0.749 | -0.258 |
| BL6 | 1.045 | 1.757 |
| BL6a | 0.633 | 1.492 |
| BXD01 | 1.28 | 2.681 |
| BXD010 | 1.412 | 2.829 |
| BXD011 | 1.732 | 2.128 |
| BXD03 | 1.05 | 1.94 |
| BXD04 | 1.956 | 3.241 |
| BXD05 | 1.179 | 2.264 |
| BXD06 | 1.882 | 2.67 |
| BXD07 | 1.13 | 2.084 |
| BXD08 | 1.647 | 1.965 |
| BXD09 | 0.58 | 1.816 |
| CAST | 0.833 | 1.86 |
| CCcont | 0.303 | 2.288 |
| DS01 | 0.659 | -0.802 |
| DS02 | 0.241 | -0.922 |
| DS04 | -0.386 | 0.11 |
| DS0c | -1.948 | -0.737 |
| GP01 | -0.951 | -0.607 |
| GP02 | 0.6 | -0.353 |
| GP0c | -1.252 | -0.077 |
| NOD | 0.436 | 1.422 |
| NZO | -0.022 | 0.22 |
| PWK | 0.664 | 2.568 |
| H37Rv_KO_CtpC | 1.392 | -0.096 |
| H37Rv_KO_CtpD | 0.9 | 1.298 |
| H37Rv_KO_Rv1272 | 0.393 | 0.542 |
| H37Rv_KO_SugABC | 0.901 | 2.209 |
| H37Rv_KO_MbtN | 1.748 | 0.963 |
| Trans05 | 0.38 | 0.827 |
| macrophage_unactivated | -1.023 | -1.146 |
| IL1 | -1.916 | -1.391 |
| Rapamycin | -2.053 | -1.114 |
| Tcell | 0.417 | 0.0 |
| GMCSF | 0.444 | -0.108 |
| IFNab | 0.133 | 1.255 |
| IFNg | -0.51 | -2.079 |
| IFNg_GMCSF1 | -0.874 | -1.141 |
| Rv1432_day32 | 0.125 | -0.804 |
| Rv1565c_day32 | -1.185 | -0.842 |
| secA2_input | -0.238 | -0.424 |
| delta_Rv3594 | -2.065 | -2.492 |
| delta_Rv3717 | -1.448 | -0.142 |
| delta_Rv3811 | -0.33 | -1.09 |
| delta_Rv0954 | -0.698 | -1.093 |
| PonA1 | -0.612 | -0.56 |
| EccD1_KO | 0.382 | -0.372 |
| EspI_KO | 0.222 | -0.322 |
| PE35_KO | -0.7 | 0.23 |
| PPE68_KO | 0.086 | -0.857 |
| glycerol2 | -0.132 | -0.115 |
| lignocerate | 0.402 | 0.838 |
| oleate | -0.17 | -0.373 |
| phosphatidylcholine | 0.543 | 0.496 |
| acetate | 0.12 | 2.545 |
| glucAc | -0.034 | 1.892 |
| Rv0950ko | 0.268 | 1.462 |
| Rv1096ko | -0.642 | 0.109 |
| Rv3684ko | -0.747 | 1.916 |
| delta_otsA_trehalose | 0.493 | -0.477 |