Top 10 genes with highest correlation to Rv0499/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3559c/- | (cc=0.5676) | info on Rv3559c/- |
| Rv3550/echA20 | (cc=0.5475) | info on Rv3550/echA20 |
| Rv2240c/- | (cc=0.5379) | info on Rv2240c/- |
| Rv3342/- | (cc=0.5244) | info on Rv3342/- |
| Rv3553/- | (cc=0.505) | info on Rv3553/- |
| Rv2758c/vapB21 | (cc=0.5036) | info on Rv2758c/vapB21 |
| Rv1906c/- | (cc=0.4999) | info on Rv1906c/- |
| Rv3540c/ltp2 | (cc=0.4871) | info on Rv3540c/ltp2 |
| Rv3057c/- | (cc=0.4754) | info on Rv3057c/- |
| Rv1793/esxN | (cc=0.4729) | info on Rv1793/esxN |
Correlation of Rv0499/- with Rv3553/-
Normalized LFCs for Rv0499/-:
(description and provenance of datasets)
| Rv0499/- | Rv3553/- | |
| Fe_supp_jason_reseq | 0.152 | -0.346 |
| low_pH_jason_reseq | 0.209 | -0.798 |
| NO_jason_reseq | 0.06 | -1.685 |
| B6_jason_reseq | -0.542 | -2.718 |
| MHCII_jason_reseq | -1.733 | -2.764 |
| Isoniazid02 | 0.319 | 0.141 |
| Rifampicin4 | 0.609 | 0.054 |
| Ethambutol3 | 0.331 | -0.113 |
| Meropenem3 | 0.152 | 1.961 |
| Vancomycin16 | 0.435 | 0.08 |
| Rv2680_day32 | -0.46 | -0.074 |
| H37Rv_KO_MarP | 1.35 | 0.487 |
| hypoxia_3wks | 0.032 | -0.845 |
| hypoxia_6wks | 0.451 | 0.311 |
| glycerol | 0.579 | -0.36 |
| cholesterol | -0.994 | -3.515 |
| AJ | 0.449 | -2.393 |
| Bibs02 | -0.832 | -4.437 |
| Bibs02c | -0.746 | -3.674 |
| BL6 | 0.127 | -1.398 |
| BL6a | -0.362 | -2.752 |
| BXD01 | -0.747 | -1.241 |
| BXD010 | -0.168 | -1.394 |
| BXD011 | 0.816 | -0.52 |
| BXD03 | -0.135 | 0.554 |
| BXD04 | -0.108 | -1.209 |
| BXD05 | 1.044 | -0.145 |
| BXD06 | 0.161 | -1.453 |
| BXD07 | 0.255 | -0.464 |
| BXD08 | -0.053 | -0.937 |
| BXD09 | 0.534 | -1.953 |
| CAST | -0.105 | -3.482 |
| CCcont | 0.453 | 0.355 |
| DS01 | -2.19 | -3.472 |
| DS02 | -0.775 | -4.682 |
| DS04 | -1.249 | -3.407 |
| DS0c | -0.896 | -5.264 |
| GP01 | 0.998 | -0.565 |
| GP02 | -0.608 | -1.861 |
| GP0c | 0.499 | 0.139 |
| NOD | 0.465 | -2.511 |
| NZO | -0.273 | 0.1 |
| PWK | 0.406 | -1.77 |
| H37Rv_KO_CtpC | -0.753 | -3.144 |
| H37Rv_KO_CtpD | 0.014 | -1.494 |
| H37Rv_KO_Rv1272 | -0.998 | -0.089 |
| H37Rv_KO_SugABC | -1.522 | -0.01 |
| H37Rv_KO_MbtN | 0.816 | -0.159 |
| Trans05 | -0.319 | 0.536 |
| macrophage_unactivated | 0.96 | 0.0 |
| IL1 | 0.65 | 0.317 |
| Rapamycin | 1.096 | 0.485 |
| Tcell | -0.137 | -2.225 |
| GMCSF | 0.869 | 0.694 |
| IFNab | 0.819 | 1.246 |
| IFNg | 1.676 | 0.203 |
| IFNg_GMCSF1 | 0.918 | 0.17 |
| Rv1432_day32 | -0.343 | -0.926 |
| Rv1565c_day32 | -0.321 | -1.589 |
| secA2_input | 0.0 | -0.471 |
| delta_Rv3594 | -0.899 | 0.318 |
| delta_Rv3717 | -0.008 | 0.539 |
| delta_Rv3811 | 0.248 | 1.096 |
| delta_Rv0954 | 0.844 | 0.451 |
| PonA1 | 0.589 | -0.04 |
| EccD1_KO | 0.434 | 0.214 |
| EspI_KO | -0.414 | -0.57 |
| PE35_KO | 0.184 | 0.0 |
| PPE68_KO | 0.278 | -0.262 |
| glycerol2 | 1.145 | -0.238 |
| lignocerate | 2.056 | 0.817 |
| oleate | -3.077 | -2.912 |
| phosphatidylcholine | 0.431 | -0.038 |
| acetate | 2.519 | 0.517 |
| glucAc | 1.7 | 0.827 |
| Rv0950ko | -0.597 | 0.525 |
| Rv1096ko | 0.0 | 1.629 |
| Rv3684ko | -1.539 | 2.024 |
| delta_otsA_trehalose | 0.999 | -0.603 |