Top 10 genes with highest correlation to Rv0499/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3559c/- | (cc=0.5676) | info on Rv3559c/- |
| Rv3550/echA20 | (cc=0.5475) | info on Rv3550/echA20 |
| Rv2240c/- | (cc=0.5379) | info on Rv2240c/- |
| Rv3342/- | (cc=0.5244) | info on Rv3342/- |
| Rv3553/- | (cc=0.505) | info on Rv3553/- |
| Rv2758c/vapB21 | (cc=0.5036) | info on Rv2758c/vapB21 |
| Rv1906c/- | (cc=0.4999) | info on Rv1906c/- |
| Rv3540c/ltp2 | (cc=0.4871) | info on Rv3540c/ltp2 |
| Rv3057c/- | (cc=0.4754) | info on Rv3057c/- |
| Rv1793/esxN | (cc=0.4729) | info on Rv1793/esxN |
Correlation of Rv0499/- with Rv3540c/ltp2
Normalized LFCs for Rv0499/-:
(description and provenance of datasets)
| Rv0499/- | Rv3540c/ltp2 | |
| Fe_supp_jason_reseq | 0.152 | -0.218 |
| low_pH_jason_reseq | 0.209 | 0.979 |
| NO_jason_reseq | 0.06 | -0.176 |
| B6_jason_reseq | -0.542 | -2.219 |
| MHCII_jason_reseq | -1.733 | -1.719 |
| Isoniazid02 | 0.319 | 2.103 |
| Rifampicin4 | 0.609 | -0.171 |
| Ethambutol3 | 0.331 | 2.831 |
| Meropenem3 | 0.152 | -0.236 |
| Vancomycin16 | 0.435 | -0.618 |
| Rv2680_day32 | -0.46 | 0.0 |
| H37Rv_KO_MarP | 1.35 | -0.169 |
| hypoxia_3wks | 0.032 | -0.132 |
| hypoxia_6wks | 0.451 | -0.069 |
| glycerol | 0.579 | 1.065 |
| cholesterol | -0.994 | -1.761 |
| AJ | 0.449 | -2.82 |
| Bibs02 | -0.832 | -2.223 |
| Bibs02c | -0.746 | -1.97 |
| BL6 | 0.127 | -0.752 |
| BL6a | -0.362 | -2.03 |
| BXD01 | -0.747 | -1.227 |
| BXD010 | -0.168 | -1.107 |
| BXD011 | 0.816 | -0.042 |
| BXD03 | -0.135 | 0.417 |
| BXD04 | -0.108 | -1.38 |
| BXD05 | 1.044 | -1.38 |
| BXD06 | 0.161 | -1.623 |
| BXD07 | 0.255 | -1.197 |
| BXD08 | -0.053 | -1.363 |
| BXD09 | 0.534 | -1.44 |
| CAST | -0.105 | -2.571 |
| CCcont | 0.453 | 0.757 |
| DS01 | -2.19 | -2.871 |
| DS02 | -0.775 | -2.644 |
| DS04 | -1.249 | -1.989 |
| DS0c | -0.896 | -2.637 |
| GP01 | 0.998 | -1.102 |
| GP02 | -0.608 | -0.929 |
| GP0c | 0.499 | 0.785 |
| NOD | 0.465 | -1.351 |
| NZO | -0.273 | -2.425 |
| PWK | 0.406 | -2.384 |
| H37Rv_KO_CtpC | -0.753 | -1.813 |
| H37Rv_KO_CtpD | 0.014 | -1.095 |
| H37Rv_KO_Rv1272 | -0.998 | -1.022 |
| H37Rv_KO_SugABC | -1.522 | -1.106 |
| H37Rv_KO_MbtN | 0.816 | -1.056 |
| Trans05 | -0.319 | -0.512 |
| macrophage_unactivated | 0.96 | -0.83 |
| IL1 | 0.65 | -0.451 |
| Rapamycin | 1.096 | 0.0 |
| Tcell | -0.137 | -3.584 |
| GMCSF | 0.869 | 0.246 |
| IFNab | 0.819 | 2.316 |
| IFNg | 1.676 | 1.013 |
| IFNg_GMCSF1 | 0.918 | -1.405 |
| Rv1432_day32 | -0.343 | -0.18 |
| Rv1565c_day32 | -0.321 | -0.766 |
| secA2_input | 0.0 | 1.249 |
| delta_Rv3594 | -0.899 | -0.225 |
| delta_Rv3717 | -0.008 | 0.37 |
| delta_Rv3811 | 0.248 | 0.437 |
| delta_Rv0954 | 0.844 | 0.652 |
| PonA1 | 0.589 | 0.693 |
| EccD1_KO | 0.434 | 0.635 |
| EspI_KO | -0.414 | 0.918 |
| PE35_KO | 0.184 | 0.292 |
| PPE68_KO | 0.278 | 0.32 |
| glycerol2 | 1.145 | 1.292 |
| lignocerate | 2.056 | 1.628 |
| oleate | -3.077 | -1.117 |
| phosphatidylcholine | 0.431 | 0.854 |
| acetate | 2.519 | 2.068 |
| glucAc | 1.7 | 2.286 |
| Rv0950ko | -0.597 | 0.093 |
| Rv1096ko | 0.0 | 1.3 |
| Rv3684ko | -1.539 | 0.845 |
| delta_otsA_trehalose | 0.999 | 0.327 |