TnSeqCorr

Top 10 genes with highest correlation to Rv0499/-:

update plotcorrelationlink to info on gene
Rv3559c/- (cc=0.5676) info on Rv3559c/-
Rv3550/echA20 (cc=0.5475) info on Rv3550/echA20
Rv2240c/- (cc=0.5379) info on Rv2240c/-
Rv3342/- (cc=0.5244) info on Rv3342/-
Rv3553/- (cc=0.505) info on Rv3553/-
Rv2758c/vapB21 (cc=0.5036) info on Rv2758c/vapB21
Rv1906c/- (cc=0.4999) info on Rv1906c/-
Rv3540c/ltp2 (cc=0.4871) info on Rv3540c/ltp2
Rv3057c/- (cc=0.4754) info on Rv3057c/-
Rv1793/esxN (cc=0.4729) info on Rv1793/esxN

Correlation of Rv0499/- with Rv3559c/-

Normalized LFCs for Rv0499/-:
(description and provenance of datasets)
Rv0499/-Rv3559c/-
Fe_supp_jason_reseq

0.152

-1.479

low_pH_jason_reseq

0.209

-0.477

NO_jason_reseq

0.06

-0.546

B6_jason_reseq

-0.542

-3.045

MHCII_jason_reseq

-1.733

-2.425

Isoniazid02

0.319

-1.294

Rifampicin4

0.609

1.532

Ethambutol3

0.331

-0.676

Meropenem3

0.152

-0.343

Vancomycin16

0.435

-0.318

Rv2680_day32

-0.46

-2.525

H37Rv_KO_MarP

1.35

2.156

hypoxia_3wks

0.032

-1.328

hypoxia_6wks

0.451

-0.927

glycerol

0.579

-0.376

cholesterol

-0.994

-2.406

AJ

0.449

-3.854

Bibs02

-0.832

-3.037

Bibs02c

-0.746

-3.475

BL6

0.127

-1.839

BL6a

-0.362

-3.29

BXD01

-0.747

-1.363

BXD010

-0.168

-0.489

BXD011

0.816

-2.116

BXD03

-0.135

-2.111

BXD04

-0.108

0.424

BXD05

1.044

-2.101

BXD06

0.161

-1.963

BXD07

0.255

-1.449

BXD08

-0.053

-1.844

BXD09

0.534

-2.067

CAST

-0.105

-3.193

CCcont

0.453

1.977

DS01

-2.19

-3.923

DS02

-0.775

-3.612

DS04

-1.249

-2.853

DS0c

-0.896

-3.603

GP01

0.998

-1.64

GP02

-0.608

-1.382

GP0c

0.499

-2.16

NOD

0.465

-3.114

NZO

-0.273

-3.313

PWK

0.406

-3.258

H37Rv_KO_CtpC

-0.753

-2.389

H37Rv_KO_CtpD

0.014

-1.658

H37Rv_KO_Rv1272

-0.998

-2.202

H37Rv_KO_SugABC

-1.522

-1.457

H37Rv_KO_MbtN

0.816

0.385

Trans05

-0.319

-2.17

macrophage_unactivated

0.96

0.688

IL1

0.65

-0.308

Rapamycin

1.096

1.547

Tcell

-0.137

-2.366

GMCSF

0.869

1.909

IFNab

0.819

1.454

IFNg

1.676

0.259

IFNg_GMCSF1

0.918

0.402

Rv1432_day32

-0.343

0.0

Rv1565c_day32

-0.321

-2.72

secA2_input

0.0

-1.565

delta_Rv3594

-0.899

-1.404

delta_Rv3717

-0.008

1.031

delta_Rv3811

0.248

-0.341

delta_Rv0954

0.844

0.302

PonA1

0.589

0.945

EccD1_KO

0.434

-1.227

EspI_KO

-0.414

-2.926

PE35_KO

0.184

0.805

PPE68_KO

0.278

0.0

glycerol2

1.145

1.725

lignocerate

2.056

2.143

oleate

-3.077

-0.22

phosphatidylcholine

0.431

1.113

acetate

2.519

1.94

glucAc

1.7

2.045

Rv0950ko

-0.597

0.621

Rv1096ko

0.0

-0.347

Rv3684ko

-1.539

-1.241

delta_otsA_trehalose

0.999

0.356