Top 10 genes with highest correlation to Rv0487/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3057c/- | (cc=0.5341) | info on Rv3057c/- |
| Rv3316/sdhC | (cc=0.5096) | info on Rv3316/sdhC |
| Rv3666c/dppA | (cc=0.4997) | info on Rv3666c/dppA |
| Rv2795c/- | (cc=0.4981) | info on Rv2795c/- |
| Rv2989/- | (cc=0.4971) | info on Rv2989/- |
| Rv2381c/mbtD | (cc=0.4942) | info on Rv2381c/mbtD |
| Rv1820/ilvG | (cc=0.4935) | info on Rv1820/ilvG |
| Rv0554/bpoC | (cc=0.492) | info on Rv0554/bpoC |
| Rv2383c/mbtB | (cc=0.4666) | info on Rv2383c/mbtB |
| Rv3574/kstR | (cc=0.4591) | info on Rv3574/kstR |
Correlation of Rv0487/- with Rv3316/sdhC
Normalized LFCs for Rv0487/-:
(description and provenance of datasets)
| Rv0487/- | Rv3316/sdhC | |
| Fe_supp_jason_reseq | -1.126 | -1.506 |
| low_pH_jason_reseq | 0.724 | 2.392 |
| NO_jason_reseq | -1.019 | 4.038 |
| B6_jason_reseq | -0.925 | -0.387 |
| MHCII_jason_reseq | -2.322 | -2.065 |
| Isoniazid02 | -0.183 | 0.902 |
| Rifampicin4 | 0.485 | 0.081 |
| Ethambutol3 | 0.291 | 1.332 |
| Meropenem3 | -0.316 | 0.569 |
| Vancomycin16 | -0.175 | 0.663 |
| Rv2680_day32 | -1.82 | -1.599 |
| H37Rv_KO_MarP | 0.291 | -2.664 |
| hypoxia_3wks | -2.648 | -0.072 |
| hypoxia_6wks | -0.856 | -0.196 |
| glycerol | -0.236 | 0.424 |
| cholesterol | -1.23 | -0.249 |
| AJ | -1.019 | -0.333 |
| Bibs02 | -0.405 | -0.882 |
| Bibs02c | -1.275 | -3.428 |
| BL6 | -0.026 | -1.665 |
| BL6a | -1.581 | -2.469 |
| BXD01 | -1.059 | -1.372 |
| BXD010 | -1.016 | -0.973 |
| BXD011 | -0.973 | -1.077 |
| BXD03 | -0.775 | -2.461 |
| BXD04 | -0.582 | -1.914 |
| BXD05 | -1.444 | -0.995 |
| BXD06 | 0.086 | -1.22 |
| BXD07 | -1.326 | -2.481 |
| BXD08 | -1.427 | -2.497 |
| BXD09 | -1.314 | -0.645 |
| CAST | 0.584 | -0.317 |
| CCcont | -0.671 | -0.868 |
| DS01 | -1.045 | -1.477 |
| DS02 | -0.416 | 0.011 |
| DS04 | -1.206 | 0.741 |
| DS0c | -1.006 | -0.585 |
| GP01 | -2.219 | -2.333 |
| GP02 | -0.831 | -2.569 |
| GP0c | -2.217 | -2.794 |
| NOD | -0.068 | -1.923 |
| NZO | -1.477 | -0.87 |
| PWK | 0.907 | 1.118 |
| H37Rv_KO_CtpC | 1.11 | -0.546 |
| H37Rv_KO_CtpD | 0.028 | 0.225 |
| H37Rv_KO_Rv1272 | -1.311 | -1.903 |
| H37Rv_KO_SugABC | -1.46 | -0.954 |
| H37Rv_KO_MbtN | 0.037 | -1.618 |
| Trans05 | -0.857 | -1.74 |
| macrophage_unactivated | 0.038 | 0.23 |
| IL1 | 0.593 | -0.386 |
| Rapamycin | -0.313 | -0.485 |
| Tcell | 1.773 | 2.561 |
| GMCSF | -0.523 | 2.368 |
| IFNab | -2.419 | -1.01 |
| IFNg | 0.211 | 0.992 |
| IFNg_GMCSF1 | 0.434 | 1.166 |
| Rv1432_day32 | -2.09 | -1.996 |
| Rv1565c_day32 | -0.637 | -1.786 |
| secA2_input | -0.338 | 0.276 |
| delta_Rv3594 | -2.112 | -2.486 |
| delta_Rv3717 | -1.436 | -3.228 |
| delta_Rv3811 | -1.819 | -2.107 |
| delta_Rv0954 | -0.221 | -1.001 |
| PonA1 | -0.539 | -0.364 |
| EccD1_KO | 0.753 | -0.243 |
| EspI_KO | 0.288 | -0.724 |
| PE35_KO | -0.37 | -0.866 |
| PPE68_KO | -0.544 | -0.147 |
| glycerol2 | 0.388 | -1.892 |
| lignocerate | 0.0 | -0.669 |
| oleate | -1.469 | -2.121 |
| phosphatidylcholine | 0.769 | -0.59 |
| acetate | 0.344 | 0.352 |
| glucAc | 0.255 | 0.227 |
| Rv0950ko | -0.467 | 0.874 |
| Rv1096ko | -0.467 | 0.03 |
| Rv3684ko | -1.333 | -0.707 |
| delta_otsA_trehalose | 0.87 | 2.171 |