Top 10 genes with highest correlation to Rv0487/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3057c/- | (cc=0.5341) | info on Rv3057c/- |
| Rv3316/sdhC | (cc=0.5096) | info on Rv3316/sdhC |
| Rv3666c/dppA | (cc=0.4997) | info on Rv3666c/dppA |
| Rv2795c/- | (cc=0.4981) | info on Rv2795c/- |
| Rv2989/- | (cc=0.4971) | info on Rv2989/- |
| Rv2381c/mbtD | (cc=0.4942) | info on Rv2381c/mbtD |
| Rv1820/ilvG | (cc=0.4935) | info on Rv1820/ilvG |
| Rv0554/bpoC | (cc=0.492) | info on Rv0554/bpoC |
| Rv2383c/mbtB | (cc=0.4666) | info on Rv2383c/mbtB |
| Rv3574/kstR | (cc=0.4591) | info on Rv3574/kstR |
Correlation of Rv0487/- with Rv2381c/mbtD
Normalized LFCs for Rv0487/-:
(description and provenance of datasets)
| Rv0487/- | Rv2381c/mbtD | |
| Fe_supp_jason_reseq | -1.126 | 0.766 |
| low_pH_jason_reseq | 0.724 | 0.979 |
| NO_jason_reseq | -1.019 | 0.0 |
| B6_jason_reseq | -0.925 | 0.0 |
| MHCII_jason_reseq | -2.322 | 0.0 |
| Isoniazid02 | -0.183 | 0.723 |
| Rifampicin4 | 0.485 | 0.634 |
| Ethambutol3 | 0.291 | 0.285 |
| Meropenem3 | -0.316 | 0.446 |
| Vancomycin16 | -0.175 | 0.621 |
| Rv2680_day32 | -1.82 | -0.131 |
| H37Rv_KO_MarP | 0.291 | 0.615 |
| hypoxia_3wks | -2.648 | -1.511 |
| hypoxia_6wks | -0.856 | -0.791 |
| glycerol | -0.236 | -0.168 |
| cholesterol | -1.23 | 0.216 |
| AJ | -1.019 | -0.193 |
| Bibs02 | -0.405 | -0.502 |
| Bibs02c | -1.275 | -0.365 |
| BL6 | -0.026 | -0.343 |
| BL6a | -1.581 | -0.165 |
| BXD01 | -1.059 | -0.358 |
| BXD010 | -1.016 | -0.352 |
| BXD011 | -0.973 | -0.35 |
| BXD03 | -0.775 | -0.371 |
| BXD04 | -0.582 | -0.34 |
| BXD05 | -1.444 | -0.369 |
| BXD06 | 0.086 | -0.111 |
| BXD07 | -1.326 | -0.38 |
| BXD08 | -1.427 | -0.365 |
| BXD09 | -1.314 | -0.386 |
| CAST | 0.584 | 0.0 |
| CCcont | -0.671 | 0.0 |
| DS01 | -1.045 | 1.514 |
| DS02 | -0.416 | 1.196 |
| DS04 | -1.206 | 0.0 |
| DS0c | -1.006 | 0.0 |
| GP01 | -2.219 | -0.271 |
| GP02 | -0.831 | -0.228 |
| GP0c | -2.217 | -0.357 |
| NOD | -0.068 | 0.0 |
| NZO | -1.477 | 0.155 |
| PWK | 0.907 | 0.152 |
| H37Rv_KO_CtpC | 1.11 | 0.0 |
| H37Rv_KO_CtpD | 0.028 | -0.348 |
| H37Rv_KO_Rv1272 | -1.311 | -0.387 |
| H37Rv_KO_SugABC | -1.46 | -0.272 |
| H37Rv_KO_MbtN | 0.037 | -0.283 |
| Trans05 | -0.857 | -0.359 |
| macrophage_unactivated | 0.038 | 0.83 |
| IL1 | 0.593 | 0.409 |
| Rapamycin | -0.313 | 0.0 |
| Tcell | 1.773 | 1.58 |
| GMCSF | -0.523 | 0.0 |
| IFNab | -2.419 | 0.0 |
| IFNg | 0.211 | 0.0 |
| IFNg_GMCSF1 | 0.434 | 0.0 |
| Rv1432_day32 | -2.09 | -0.18 |
| Rv1565c_day32 | -0.637 | 1.579 |
| secA2_input | -0.338 | 0.0 |
| delta_Rv3594 | -2.112 | -0.717 |
| delta_Rv3717 | -1.436 | -0.59 |
| delta_Rv3811 | -1.819 | -0.87 |
| delta_Rv0954 | -0.221 | -0.606 |
| PonA1 | -0.539 | 0.851 |
| EccD1_KO | 0.753 | 0.921 |
| EspI_KO | 0.288 | 0.285 |
| PE35_KO | -0.37 | 1.059 |
| PPE68_KO | -0.544 | 1.161 |
| glycerol2 | 0.388 | 0.369 |
| lignocerate | 0.0 | 0.591 |
| oleate | -1.469 | 0.196 |
| phosphatidylcholine | 0.769 | 0.368 |
| acetate | 0.344 | 0.63 |
| glucAc | 0.255 | 0.877 |
| Rv0950ko | -0.467 | -0.793 |
| Rv1096ko | -0.467 | 0.0 |
| Rv3684ko | -1.333 | 0.255 |
| delta_otsA_trehalose | 0.87 | 0.336 |