Top 10 genes with highest correlation to Rv0487/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3057c/- | (cc=0.5341) | info on Rv3057c/- |
| Rv3316/sdhC | (cc=0.5096) | info on Rv3316/sdhC |
| Rv3666c/dppA | (cc=0.4997) | info on Rv3666c/dppA |
| Rv2795c/- | (cc=0.4981) | info on Rv2795c/- |
| Rv2989/- | (cc=0.4971) | info on Rv2989/- |
| Rv2381c/mbtD | (cc=0.4942) | info on Rv2381c/mbtD |
| Rv1820/ilvG | (cc=0.4935) | info on Rv1820/ilvG |
| Rv0554/bpoC | (cc=0.492) | info on Rv0554/bpoC |
| Rv2383c/mbtB | (cc=0.4666) | info on Rv2383c/mbtB |
| Rv3574/kstR | (cc=0.4591) | info on Rv3574/kstR |
Correlation of Rv0487/- with Rv2383c/mbtB
Normalized LFCs for Rv0487/-:
(description and provenance of datasets)
| Rv0487/- | Rv2383c/mbtB | |
| Fe_supp_jason_reseq | -1.126 | 1.163 |
| low_pH_jason_reseq | 0.724 | 1.506 |
| NO_jason_reseq | -1.019 | -0.541 |
| B6_jason_reseq | -0.925 | -0.649 |
| MHCII_jason_reseq | -2.322 | -0.572 |
| Isoniazid02 | -0.183 | -0.076 |
| Rifampicin4 | 0.485 | 0.512 |
| Ethambutol3 | 0.291 | 0.458 |
| Meropenem3 | -0.316 | -0.612 |
| Vancomycin16 | -0.175 | -0.207 |
| Rv2680_day32 | -1.82 | -1.693 |
| H37Rv_KO_MarP | 0.291 | 1.146 |
| hypoxia_3wks | -2.648 | -2.759 |
| hypoxia_6wks | -0.856 | -2.234 |
| glycerol | -0.236 | 1.271 |
| cholesterol | -1.23 | 0.8 |
| AJ | -1.019 | -1.037 |
| Bibs02 | -0.405 | -1.09 |
| Bibs02c | -1.275 | -1.423 |
| BL6 | -0.026 | -1.089 |
| BL6a | -1.581 | -1.181 |
| BXD01 | -1.059 | -1.004 |
| BXD010 | -1.016 | -1.115 |
| BXD011 | -0.973 | -1.109 |
| BXD03 | -0.775 | -1.177 |
| BXD04 | -0.582 | -0.953 |
| BXD05 | -1.444 | -1.172 |
| BXD06 | 0.086 | -0.796 |
| BXD07 | -1.326 | -1.206 |
| BXD08 | -1.427 | -1.158 |
| BXD09 | -1.314 | -1.224 |
| CAST | 0.584 | 0.102 |
| CCcont | -0.671 | -0.219 |
| DS01 | -1.045 | 2.917 |
| DS02 | -0.416 | 1.141 |
| DS04 | -1.206 | 0.964 |
| DS0c | -1.006 | -0.101 |
| GP01 | -2.219 | -0.761 |
| GP02 | -0.831 | -0.724 |
| GP0c | -2.217 | -1.002 |
| NOD | -0.068 | 0.195 |
| NZO | -1.477 | -0.757 |
| PWK | 0.907 | -0.745 |
| H37Rv_KO_CtpC | 1.11 | -0.075 |
| H37Rv_KO_CtpD | 0.028 | -0.4 |
| H37Rv_KO_Rv1272 | -1.311 | -1.228 |
| H37Rv_KO_SugABC | -1.46 | -0.674 |
| H37Rv_KO_MbtN | 0.037 | -0.614 |
| Trans05 | -0.857 | -1.138 |
| macrophage_unactivated | 0.038 | 1.098 |
| IL1 | 0.593 | 0.0 |
| Rapamycin | -0.313 | 0.0 |
| Tcell | 1.773 | 2.809 |
| GMCSF | -0.523 | 0.0 |
| IFNab | -2.419 | -0.417 |
| IFNg | 0.211 | -0.369 |
| IFNg_GMCSF1 | 0.434 | 0.757 |
| Rv1432_day32 | -2.09 | -0.343 |
| Rv1565c_day32 | -0.637 | 1.3 |
| secA2_input | -0.338 | 1.586 |
| delta_Rv3594 | -2.112 | -1.432 |
| delta_Rv3717 | -1.436 | -1.178 |
| delta_Rv3811 | -1.819 | -1.392 |
| delta_Rv0954 | -0.221 | -0.087 |
| PonA1 | -0.539 | 0.624 |
| EccD1_KO | 0.753 | 1.875 |
| EspI_KO | 0.288 | 0.582 |
| PE35_KO | -0.37 | 2.226 |
| PPE68_KO | -0.544 | 2.188 |
| glycerol2 | 0.388 | -0.779 |
| lignocerate | 0.0 | -0.577 |
| oleate | -1.469 | -0.457 |
| phosphatidylcholine | 0.769 | -0.451 |
| acetate | 0.344 | 0.185 |
| glucAc | 0.255 | -0.49 |
| Rv0950ko | -0.467 | -0.109 |
| Rv1096ko | -0.467 | 0.208 |
| Rv3684ko | -1.333 | 0.0 |
| delta_otsA_trehalose | 0.87 | -0.539 |