TnSeqCorr

Top 10 genes with highest correlation to Rv0370c/-:

update plotcorrelationlink to info on gene
Rv0827c/kmtR (cc=0.5373) info on Rv0827c/kmtR
Rv3291c/lrpA (cc=0.5162) info on Rv3291c/lrpA
Rv1891/- (cc=0.4653) info on Rv1891/-
Rv0845/- (cc=0.4497) info on Rv0845/-
Rv1397c/vapC10 (cc=0.4465) info on Rv1397c/vapC10
Rv1662/pks8 (cc=0.4362) info on Rv1662/pks8
Rv1507c/- (cc=0.4336) info on Rv1507c/-
Rv2793c/truB (cc=0.4206) info on Rv2793c/truB
Rv3904c/esxE (cc=0.4159) info on Rv3904c/esxE
Rv3023c/- (cc=0.4149) info on Rv3023c/-

Correlation of Rv0370c/- with Rv1397c/vapC10

Normalized LFCs for Rv0370c/-:
(description and provenance of datasets)
Rv0370c/-Rv1397c/vapC10
Fe_supp_jason_reseq

-0.553

0.586

low_pH_jason_reseq

1.696

2.312

NO_jason_reseq

0.42

-1.26

B6_jason_reseq

-0.388

-0.488

MHCII_jason_reseq

-1.006

0.427

Isoniazid02

-0.741

0.598

Rifampicin4

0.72

0.558

Ethambutol3

-0.912

0.585

Meropenem3

-0.072

1.412

Vancomycin16

0.101

0.655

Rv2680_day32

-0.893

-0.628

H37Rv_KO_MarP

-0.416

0.111

hypoxia_3wks

0.0

-0.379

hypoxia_6wks

0.372

-0.157

glycerol

0.471

-0.784

cholesterol

-0.098

-0.681

AJ

1.4

0.898

Bibs02

0.608

-0.759

Bibs02c

-0.54

0.074

BL6

0.117

0.813

BL6a

1.195

1.702

BXD01

0.042

1.228

BXD010

1.067

2.436

BXD011

1.169

1.238

BXD03

0.243

0.094

BXD04

0.382

1.092

BXD05

-0.188

1.537

BXD06

0.73

0.918

BXD07

1.112

0.965

BXD08

0.442

0.799

BXD09

0.434

2.116

CAST

-0.237

-0.085

CCcont

0.633

0.754

DS01

0.075

-1.247

DS02

-0.224

0.077

DS04

-0.2

0.521

DS0c

-0.146

0.077

GP01

-0.594

-1.467

GP02

0.052

-0.698

GP0c

-0.86

-0.99

NOD

-0.775

1.058

NZO

1.631

0.139

PWK

0.789

0.831

H37Rv_KO_CtpC

1.305

1.132

H37Rv_KO_CtpD

1.835

1.384

H37Rv_KO_Rv1272

1.819

1.458

H37Rv_KO_SugABC

1.368

1.626

H37Rv_KO_MbtN

1.359

2.195

Trans05

1.569

1.174

macrophage_unactivated

0.518

0.767

IL1

0.985

1.59

Rapamycin

0.15

2.108

Tcell

-0.336

1.408

GMCSF

0.375

0.826

IFNab

-0.076

0.466

IFNg

0.78

0.2

IFNg_GMCSF1

-0.408

-0.135

Rv1432_day32

0.524

0.218

Rv1565c_day32

0.82

0.963

secA2_input

-0.204

0.235

delta_Rv3594

0.058

-0.479

delta_Rv3717

0.273

-0.063

delta_Rv3811

-0.757

-0.944

delta_Rv0954

0.704

-0.182

PonA1

1.062

-0.8

EccD1_KO

0.0

1.0

EspI_KO

0.736

-0.904

PE35_KO

0.543

-0.615

PPE68_KO

0.512

0.486

glycerol2

-0.618

-1.234

lignocerate

-0.415

-1.03

oleate

-1.117

0.448

phosphatidylcholine

-0.618

-0.812

acetate

0.658

-0.512

glucAc

0.184

-1.873

Rv0950ko

0.684

0.645

Rv1096ko

1.342

0.172

Rv3684ko

0.829

2.06

delta_otsA_trehalose

-0.672

-1.407