Top 10 genes with highest correlation to Rv0303/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0276/- | (cc=0.5835) | info on Rv0276/- |
| Rv0592/mce2D | (cc=0.5553) | info on Rv0592/mce2D |
| Rv3839/- | (cc=0.5345) | info on Rv3839/- |
| Rv0918/- | (cc=0.5206) | info on Rv0918/- |
| Rv2771c/- | (cc=0.5135) | info on Rv2771c/- |
| Rv0071/- | (cc=0.4974) | info on Rv0071/- |
| Rv3788/- | (cc=0.4881) | info on Rv3788/- |
| Rv3103c/- | (cc=0.4749) | info on Rv3103c/- |
| Rv1453/- | (cc=0.461) | info on Rv1453/- |
| Rv0233/nrdB | (cc=0.4576) | info on Rv0233/nrdB |
Correlation of Rv0303/- with Rv0071/-
Normalized LFCs for Rv0303/-:
(description and provenance of datasets)
| Rv0303/- | Rv0071/- | |
| Fe_supp_jason_reseq | 0.071 | 0.624 |
| low_pH_jason_reseq | -0.577 | -0.139 |
| NO_jason_reseq | -0.494 | 0.517 |
| B6_jason_reseq | 0.857 | 1.764 |
| MHCII_jason_reseq | -0.077 | 1.675 |
| Isoniazid02 | -0.162 | 0.073 |
| Rifampicin4 | -0.13 | 0.75 |
| Ethambutol3 | -0.206 | 1.131 |
| Meropenem3 | -0.156 | 0.694 |
| Vancomycin16 | -0.127 | 0.218 |
| Rv2680_day32 | 0.829 | 1.537 |
| H37Rv_KO_MarP | 0.241 | 0.059 |
| hypoxia_3wks | 0.136 | -0.152 |
| hypoxia_6wks | 0.66 | -0.182 |
| glycerol | -0.13 | 1.16 |
| cholesterol | -0.764 | 1.207 |
| AJ | -0.343 | -0.504 |
| Bibs02 | -0.65 | 0.474 |
| Bibs02c | 0.853 | 0.887 |
| BL6 | 0.246 | 0.441 |
| BL6a | 0.098 | -0.265 |
| BXD01 | -0.735 | -0.919 |
| BXD010 | -0.357 | -0.781 |
| BXD011 | -0.805 | -0.745 |
| BXD03 | -0.487 | -1.044 |
| BXD04 | -0.092 | -0.664 |
| BXD05 | -0.316 | -0.091 |
| BXD06 | -0.356 | -0.636 |
| BXD07 | -0.369 | -0.722 |
| BXD08 | -1.018 | -0.8 |
| BXD09 | -0.325 | -0.69 |
| CAST | 0.317 | 0.235 |
| CCcont | -0.969 | -0.342 |
| DS01 | -0.075 | 0.301 |
| DS02 | 0.325 | 0.767 |
| DS04 | 0.24 | 0.51 |
| DS0c | 0.239 | -0.093 |
| GP01 | -0.658 | -2.601 |
| GP02 | -1.356 | -2.703 |
| GP0c | -0.727 | -1.661 |
| NOD | 0.436 | 1.694 |
| NZO | -0.376 | 0.027 |
| PWK | 0.159 | 0.443 |
| H37Rv_KO_CtpC | -0.116 | 0.0 |
| H37Rv_KO_CtpD | 0.669 | 0.247 |
| H37Rv_KO_Rv1272 | 0.418 | -0.757 |
| H37Rv_KO_SugABC | -1.585 | -0.655 |
| H37Rv_KO_MbtN | -1.073 | -0.546 |
| Trans05 | -0.511 | -0.911 |
| macrophage_unactivated | -0.177 | 0.085 |
| IL1 | -0.092 | 0.181 |
| Rapamycin | -0.733 | 0.779 |
| Tcell | -0.287 | -0.088 |
| GMCSF | -0.301 | 0.671 |
| IFNab | -0.856 | -0.366 |
| IFNg | -0.083 | -0.171 |
| IFNg_GMCSF1 | -0.984 | 0.776 |
| Rv1432_day32 | 0.31 | 0.426 |
| Rv1565c_day32 | 0.028 | 1.978 |
| secA2_input | 0.554 | 1.85 |
| delta_Rv3594 | -0.58 | -0.136 |
| delta_Rv3717 | -0.312 | -0.409 |
| delta_Rv3811 | -0.739 | -0.201 |
| delta_Rv0954 | -0.868 | 0.828 |
| PonA1 | -0.119 | 0.177 |
| EccD1_KO | -0.197 | -1.727 |
| EspI_KO | -0.836 | -1.931 |
| PE35_KO | -0.744 | -1.248 |
| PPE68_KO | -0.733 | -1.017 |
| glycerol2 | -0.067 | 0.422 |
| lignocerate | -0.311 | 0.559 |
| oleate | 0.024 | -0.903 |
| phosphatidylcholine | -0.126 | 0.172 |
| acetate | -0.603 | 0.321 |
| glucAc | -0.315 | 0.587 |
| Rv0950ko | 0.651 | 0.066 |
| Rv1096ko | 1.095 | 0.709 |
| Rv3684ko | 0.956 | -0.072 |
| delta_otsA_trehalose | 1.464 | 1.156 |