Top 10 genes with highest correlation to Rv0222/echA1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3847/- | (cc=0.5955) | info on Rv3847/- |
| Rv3770B/- | (cc=0.5824) | info on Rv3770B/- |
| Rv2495c/bkdC | (cc=0.5804) | info on Rv2495c/bkdC |
| Rv3840/- | (cc=0.5591) | info on Rv3840/- |
| Rv0822c/- | (cc=0.5506) | info on Rv0822c/- |
| Rv0220/lipC | (cc=0.534) | info on Rv0220/lipC |
| Rv0971c/echA7 | (cc=0.5292) | info on Rv0971c/echA7 |
| Rv1787/PPE25 | (cc=0.5288) | info on Rv1787/PPE25 |
| Rv3146/nuoB | (cc=0.5256) | info on Rv3146/nuoB |
| Rv1551/plsB1 | (cc=0.5196) | info on Rv1551/plsB1 |
Correlation of Rv0222/echA1 with Rv3770B/-
Normalized LFCs for Rv0222/echA1:
(description and provenance of datasets)
| Rv0222/echA1 | Rv3770B/- | |
| Fe_supp_jason_reseq | -3.435 | -1.675 |
| low_pH_jason_reseq | -2.431 | -1.302 |
| NO_jason_reseq | 0.465 | -0.16 |
| B6_jason_reseq | -3.258 | -2.219 |
| MHCII_jason_reseq | -1.782 | -3.504 |
| Isoniazid02 | -0.8 | 0.819 |
| Rifampicin4 | -0.582 | -0.842 |
| Ethambutol3 | -0.164 | 0.026 |
| Meropenem3 | -0.258 | -0.31 |
| Vancomycin16 | -0.57 | 1.173 |
| Rv2680_day32 | -0.048 | 0.368 |
| H37Rv_KO_MarP | -0.138 | -0.346 |
| hypoxia_3wks | 0.63 | -0.211 |
| hypoxia_6wks | -0.065 | -0.342 |
| glycerol | -0.035 | 1.542 |
| cholesterol | 0.861 | 2.008 |
| AJ | 0.442 | 0.18 |
| Bibs02 | -0.237 | -0.319 |
| Bibs02c | -0.887 | 0.681 |
| BL6 | 1.376 | 2.153 |
| BL6a | 0.672 | 2.365 |
| BXD01 | -0.046 | 1.88 |
| BXD010 | -0.191 | 1.015 |
| BXD011 | 1.09 | 1.725 |
| BXD03 | 1.092 | 1.77 |
| BXD04 | 2.172 | 3.099 |
| BXD05 | 1.202 | 2.054 |
| BXD06 | 0.293 | 2.271 |
| BXD07 | 0.891 | 2.047 |
| BXD08 | 1.148 | 2.3 |
| BXD09 | 0.863 | 2.524 |
| CAST | 0.662 | 2.865 |
| CCcont | 0.75 | 1.557 |
| DS01 | -0.306 | -1.619 |
| DS02 | 0.625 | 0.128 |
| DS04 | 2.54 | 2.781 |
| DS0c | 0.317 | 1.114 |
| GP01 | 1.765 | 1.543 |
| GP02 | 1.928 | -1.205 |
| GP0c | 1.358 | 0.404 |
| NOD | 1.741 | 2.257 |
| NZO | -0.035 | -1.793 |
| PWK | -0.78 | 1.361 |
| H37Rv_KO_CtpC | 0.028 | -0.033 |
| H37Rv_KO_CtpD | 1.355 | 0.121 |
| H37Rv_KO_Rv1272 | -0.025 | 0.918 |
| H37Rv_KO_SugABC | 0.682 | 1.782 |
| H37Rv_KO_MbtN | 2.338 | 2.066 |
| Trans05 | -1.09 | 2.42 |
| macrophage_unactivated | -0.035 | 0.331 |
| IL1 | 1.207 | 0.211 |
| Rapamycin | 0.767 | 0.028 |
| Tcell | 0.342 | 1.219 |
| GMCSF | 0.539 | -0.145 |
| IFNab | -0.133 | 1.533 |
| IFNg | 0.059 | 0.457 |
| IFNg_GMCSF1 | 0.101 | 1.389 |
| Rv1432_day32 | 0.18 | 0.0 |
| Rv1565c_day32 | 0.025 | 1.204 |
| secA2_input | -0.794 | -0.266 |
| delta_Rv3594 | -0.187 | 1.747 |
| delta_Rv3717 | -0.607 | 0.292 |
| delta_Rv3811 | -0.379 | 0.836 |
| delta_Rv0954 | -0.242 | -0.942 |
| PonA1 | -0.435 | 1.377 |
| EccD1_KO | -1.727 | 0.664 |
| EspI_KO | -0.268 | 0.693 |
| PE35_KO | 0.175 | 0.825 |
| PPE68_KO | -0.909 | -0.358 |
| glycerol2 | -0.888 | 0.464 |
| lignocerate | -0.919 | -0.884 |
| oleate | -0.207 | 0.224 |
| phosphatidylcholine | -0.689 | 0.231 |
| acetate | -0.447 | -1.584 |
| glucAc | -1.339 | -2.417 |
| Rv0950ko | 0.751 | 1.098 |
| Rv1096ko | 1.3 | 1.794 |
| Rv3684ko | 0.0 | 1.677 |
| delta_otsA_trehalose | -0.267 | -2.395 |