Top 10 genes with highest correlation to Rv0222/echA1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3847/- | (cc=0.5955) | info on Rv3847/- |
| Rv3770B/- | (cc=0.5824) | info on Rv3770B/- |
| Rv2495c/bkdC | (cc=0.5804) | info on Rv2495c/bkdC |
| Rv3840/- | (cc=0.5591) | info on Rv3840/- |
| Rv0822c/- | (cc=0.5506) | info on Rv0822c/- |
| Rv0220/lipC | (cc=0.534) | info on Rv0220/lipC |
| Rv0971c/echA7 | (cc=0.5292) | info on Rv0971c/echA7 |
| Rv1787/PPE25 | (cc=0.5288) | info on Rv1787/PPE25 |
| Rv3146/nuoB | (cc=0.5256) | info on Rv3146/nuoB |
| Rv1551/plsB1 | (cc=0.5196) | info on Rv1551/plsB1 |
Correlation of Rv0222/echA1 with Rv1787/PPE25
Normalized LFCs for Rv0222/echA1:
(description and provenance of datasets)
| Rv0222/echA1 | Rv1787/PPE25 | |
| Fe_supp_jason_reseq | -3.435 | -0.851 |
| low_pH_jason_reseq | -2.431 | -1.655 |
| NO_jason_reseq | 0.465 | -0.042 |
| B6_jason_reseq | -3.258 | -1.404 |
| MHCII_jason_reseq | -1.782 | -1.249 |
| Isoniazid02 | -0.8 | 0.308 |
| Rifampicin4 | -0.582 | 0.842 |
| Ethambutol3 | -0.164 | 0.372 |
| Meropenem3 | -0.258 | 0.574 |
| Vancomycin16 | -0.57 | -0.398 |
| Rv2680_day32 | -0.048 | 0.419 |
| H37Rv_KO_MarP | -0.138 | -0.1 |
| hypoxia_3wks | 0.63 | 0.267 |
| hypoxia_6wks | -0.065 | 0.0 |
| glycerol | -0.035 | 0.041 |
| cholesterol | 0.861 | -0.952 |
| AJ | 0.442 | 0.492 |
| Bibs02 | -0.237 | 0.221 |
| Bibs02c | -0.887 | -0.029 |
| BL6 | 1.376 | 0.067 |
| BL6a | 0.672 | 0.158 |
| BXD01 | -0.046 | 0.369 |
| BXD010 | -0.191 | 0.332 |
| BXD011 | 1.09 | 0.413 |
| BXD03 | 1.092 | 0.551 |
| BXD04 | 2.172 | 0.157 |
| BXD05 | 1.202 | 0.695 |
| BXD06 | 0.293 | 0.237 |
| BXD07 | 0.891 | 0.622 |
| BXD08 | 1.148 | 0.401 |
| BXD09 | 0.863 | 0.435 |
| CAST | 0.662 | -0.008 |
| CCcont | 0.75 | 0.056 |
| DS01 | -0.306 | -0.476 |
| DS02 | 0.625 | 0.022 |
| DS04 | 2.54 | 0.559 |
| DS0c | 0.317 | 0.044 |
| GP01 | 1.765 | 0.916 |
| GP02 | 1.928 | 1.683 |
| GP0c | 1.358 | 0.736 |
| NOD | 1.741 | -0.039 |
| NZO | -0.035 | 0.342 |
| PWK | -0.78 | 0.337 |
| H37Rv_KO_CtpC | 0.028 | 0.718 |
| H37Rv_KO_CtpD | 1.355 | 0.635 |
| H37Rv_KO_Rv1272 | -0.025 | 0.769 |
| H37Rv_KO_SugABC | 0.682 | 0.657 |
| H37Rv_KO_MbtN | 2.338 | 0.831 |
| Trans05 | -1.09 | 0.971 |
| macrophage_unactivated | -0.035 | 0.41 |
| IL1 | 1.207 | 0.501 |
| Rapamycin | 0.767 | -0.021 |
| Tcell | 0.342 | 0.632 |
| GMCSF | 0.539 | 1.009 |
| IFNab | -0.133 | -0.577 |
| IFNg | 0.059 | 1.013 |
| IFNg_GMCSF1 | 0.101 | 0.886 |
| Rv1432_day32 | 0.18 | 0.394 |
| Rv1565c_day32 | 0.025 | -0.581 |
| secA2_input | -0.794 | 0.504 |
| delta_Rv3594 | -0.187 | -0.171 |
| delta_Rv3717 | -0.607 | -0.298 |
| delta_Rv3811 | -0.379 | -0.228 |
| delta_Rv0954 | -0.242 | -0.238 |
| PonA1 | -0.435 | -0.602 |
| EccD1_KO | -1.727 | -0.043 |
| EspI_KO | -0.268 | 0.371 |
| PE35_KO | 0.175 | 0.327 |
| PPE68_KO | -0.909 | -0.186 |
| glycerol2 | -0.888 | 0.017 |
| lignocerate | -0.919 | -0.3 |
| oleate | -0.207 | 0.517 |
| phosphatidylcholine | -0.689 | 0.353 |
| acetate | -0.447 | -0.229 |
| glucAc | -1.339 | -0.284 |
| Rv0950ko | 0.751 | 0.323 |
| Rv1096ko | 1.3 | -0.688 |
| Rv3684ko | 0.0 | -0.793 |
| delta_otsA_trehalose | -0.267 | 0.776 |