Top 10 genes with highest correlation to Rv0222/echA1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3847/- | (cc=0.5955) | info on Rv3847/- |
| Rv3770B/- | (cc=0.5824) | info on Rv3770B/- |
| Rv2495c/bkdC | (cc=0.5804) | info on Rv2495c/bkdC |
| Rv3840/- | (cc=0.5591) | info on Rv3840/- |
| Rv0822c/- | (cc=0.5506) | info on Rv0822c/- |
| Rv0220/lipC | (cc=0.534) | info on Rv0220/lipC |
| Rv0971c/echA7 | (cc=0.5292) | info on Rv0971c/echA7 |
| Rv1787/PPE25 | (cc=0.5288) | info on Rv1787/PPE25 |
| Rv3146/nuoB | (cc=0.5256) | info on Rv3146/nuoB |
| Rv1551/plsB1 | (cc=0.5196) | info on Rv1551/plsB1 |
Correlation of Rv0222/echA1 with Rv3847/-
Normalized LFCs for Rv0222/echA1:
(description and provenance of datasets)
| Rv0222/echA1 | Rv3847/- | |
| Fe_supp_jason_reseq | -3.435 | -1.283 |
| low_pH_jason_reseq | -2.431 | -1.673 |
| NO_jason_reseq | 0.465 | 0.215 |
| B6_jason_reseq | -3.258 | -0.746 |
| MHCII_jason_reseq | -1.782 | -1.827 |
| Isoniazid02 | -0.8 | 0.992 |
| Rifampicin4 | -0.582 | 0.138 |
| Ethambutol3 | -0.164 | 0.615 |
| Meropenem3 | -0.258 | 0.35 |
| Vancomycin16 | -0.57 | -0.236 |
| Rv2680_day32 | -0.048 | 1.596 |
| H37Rv_KO_MarP | -0.138 | 0.429 |
| hypoxia_3wks | 0.63 | 0.881 |
| hypoxia_6wks | -0.065 | 0.549 |
| glycerol | -0.035 | -1.113 |
| cholesterol | 0.861 | -1.049 |
| AJ | 0.442 | 0.881 |
| Bibs02 | -0.237 | -0.55 |
| Bibs02c | -0.887 | -1.153 |
| BL6 | 1.376 | 0.807 |
| BL6a | 0.672 | 0.933 |
| BXD01 | -0.046 | 0.341 |
| BXD010 | -0.191 | 0.433 |
| BXD011 | 1.09 | 0.806 |
| BXD03 | 1.092 | 1.687 |
| BXD04 | 2.172 | 0.864 |
| BXD05 | 1.202 | 1.836 |
| BXD06 | 0.293 | 0.948 |
| BXD07 | 0.891 | 1.003 |
| BXD08 | 1.148 | 0.93 |
| BXD09 | 0.863 | 1.398 |
| CAST | 0.662 | 0.177 |
| CCcont | 0.75 | 0.465 |
| DS01 | -0.306 | 0.084 |
| DS02 | 0.625 | 0.457 |
| DS04 | 2.54 | 0.288 |
| DS0c | 0.317 | 0.745 |
| GP01 | 1.765 | 3.22 |
| GP02 | 1.928 | 0.901 |
| GP0c | 1.358 | 2.008 |
| NOD | 1.741 | 0.818 |
| NZO | -0.035 | 0.566 |
| PWK | -0.78 | 1.09 |
| H37Rv_KO_CtpC | 0.028 | 1.546 |
| H37Rv_KO_CtpD | 1.355 | 0.631 |
| H37Rv_KO_Rv1272 | -0.025 | 0.904 |
| H37Rv_KO_SugABC | 0.682 | 1.28 |
| H37Rv_KO_MbtN | 2.338 | 0.178 |
| Trans05 | -1.09 | -0.525 |
| macrophage_unactivated | -0.035 | -0.041 |
| IL1 | 1.207 | -0.495 |
| Rapamycin | 0.767 | -0.04 |
| Tcell | 0.342 | 0.169 |
| GMCSF | 0.539 | 0.124 |
| IFNab | -0.133 | 0.333 |
| IFNg | 0.059 | 0.858 |
| IFNg_GMCSF1 | 0.101 | 0.839 |
| Rv1432_day32 | 0.18 | 0.249 |
| Rv1565c_day32 | 0.025 | -0.112 |
| secA2_input | -0.794 | 0.72 |
| delta_Rv3594 | -0.187 | -0.338 |
| delta_Rv3717 | -0.607 | -1.266 |
| delta_Rv3811 | -0.379 | -0.494 |
| delta_Rv0954 | -0.242 | 0.274 |
| PonA1 | -0.435 | -0.753 |
| EccD1_KO | -1.727 | -0.21 |
| EspI_KO | -0.268 | -0.436 |
| PE35_KO | 0.175 | -0.799 |
| PPE68_KO | -0.909 | -0.374 |
| glycerol2 | -0.888 | -1.31 |
| lignocerate | -0.919 | -1.655 |
| oleate | -0.207 | -0.737 |
| phosphatidylcholine | -0.689 | -1.595 |
| acetate | -0.447 | -1.333 |
| glucAc | -1.339 | -0.941 |
| Rv0950ko | 0.751 | 0.44 |
| Rv1096ko | 1.3 | 0.754 |
| Rv3684ko | 0.0 | 0.377 |
| delta_otsA_trehalose | -0.267 | -0.837 |