Top 10 genes with highest correlation to Rv0088/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1362c/- | (cc=0.5806) | info on Rv1362c/- |
| Rv3157/nuoM | (cc=0.5689) | info on Rv3157/nuoM |
| Rv2500c/fadE19 | (cc=0.5156) | info on Rv2500c/fadE19 |
| Rv0055/rpsR1 | (cc=0.5105) | info on Rv0055/rpsR1 |
| Rv3759c/proX | (cc=0.5037) | info on Rv3759c/proX |
| Rv2275/- | (cc=0.5002) | info on Rv2275/- |
| Rv2584c/apt | (cc=0.483) | info on Rv2584c/apt |
| Rv3166c/- | (cc=0.4817) | info on Rv3166c/- |
| Rv3529c/- | (cc=0.4772) | info on Rv3529c/- |
| Rv2185c/TB16.3 | (cc=0.4684) | info on Rv2185c/TB16.3 |
Correlation of Rv0088/- with Rv3759c/proX
Normalized LFCs for Rv0088/-:
(description and provenance of datasets)
| Rv0088/- | Rv3759c/proX | |
| Fe_supp_jason_reseq | -0.898 | -0.131 |
| low_pH_jason_reseq | 1.047 | -0.139 |
| NO_jason_reseq | 0.315 | -0.648 |
| B6_jason_reseq | -0.739 | -1.588 |
| MHCII_jason_reseq | 0.06 | -0.604 |
| Isoniazid02 | -0.319 | -0.307 |
| Rifampicin4 | 0.295 | -0.198 |
| Ethambutol3 | 0.347 | -0.207 |
| Meropenem3 | 0.407 | -0.043 |
| Vancomycin16 | 0.289 | 0.273 |
| Rv2680_day32 | 0.593 | 0.285 |
| H37Rv_KO_MarP | 0.0 | 0.428 |
| hypoxia_3wks | 0.371 | 0.506 |
| hypoxia_6wks | 0.0 | 1.432 |
| glycerol | 0.0 | 0.695 |
| cholesterol | 0.585 | -0.423 |
| AJ | 0.845 | 0.529 |
| Bibs02 | -0.109 | -1.189 |
| Bibs02c | -0.887 | -0.647 |
| BL6 | 0.601 | 1.359 |
| BL6a | 1.435 | 1.277 |
| BXD01 | 0.475 | 0.617 |
| BXD010 | 0.238 | 0.808 |
| BXD011 | 1.112 | 0.923 |
| BXD03 | 1.264 | 1.553 |
| BXD04 | 1.213 | 1.311 |
| BXD05 | 1.304 | 1.05 |
| BXD06 | 1.339 | 1.42 |
| BXD07 | 1.243 | 1.055 |
| BXD08 | 0.842 | 1.108 |
| BXD09 | 1.394 | 1.695 |
| CAST | -0.21 | -1.143 |
| CCcont | 1.187 | 0.594 |
| DS01 | -0.291 | -0.731 |
| DS02 | -0.922 | -0.458 |
| DS04 | -0.51 | -1.356 |
| DS0c | 0.063 | -0.057 |
| GP01 | -1.051 | -0.767 |
| GP02 | -0.102 | -1.184 |
| GP0c | 0.474 | -1.279 |
| NOD | -0.351 | -0.814 |
| NZO | 0.767 | -0.078 |
| PWK | 0.632 | 0.301 |
| H37Rv_KO_CtpC | -1.865 | 0.371 |
| H37Rv_KO_CtpD | 0.899 | 1.47 |
| H37Rv_KO_Rv1272 | 1.903 | 0.966 |
| H37Rv_KO_SugABC | 1.099 | 1.304 |
| H37Rv_KO_MbtN | -1.097 | -0.917 |
| Trans05 | 0.928 | 1.058 |
| macrophage_unactivated | 0.66 | -0.114 |
| IL1 | 1.124 | 0.682 |
| Rapamycin | 0.144 | 0.491 |
| Tcell | -0.052 | 0.228 |
| GMCSF | -0.217 | 0.272 |
| IFNab | 0.834 | 0.133 |
| IFNg | -0.131 | 0.869 |
| IFNg_GMCSF1 | -0.368 | 0.553 |
| Rv1432_day32 | 0.0 | 0.194 |
| Rv1565c_day32 | -0.725 | 0.881 |
| secA2_input | -0.939 | -1.268 |
| delta_Rv3594 | -0.566 | 0.252 |
| delta_Rv3717 | -1.033 | -1.472 |
| delta_Rv3811 | -0.449 | 0.126 |
| delta_Rv0954 | -0.941 | -0.262 |
| PonA1 | -1.708 | -2.103 |
| EccD1_KO | 0.635 | -0.27 |
| EspI_KO | 0.0 | -0.2 |
| PE35_KO | 0.817 | 0.321 |
| PPE68_KO | 1.945 | -0.112 |
| glycerol2 | 1.274 | -0.223 |
| lignocerate | 0.418 | -0.235 |
| oleate | 0.601 | 0.062 |
| phosphatidylcholine | 0.594 | -0.176 |
| acetate | 0.748 | -0.025 |
| glucAc | 0.172 | -0.536 |
| Rv0950ko | -1.879 | 0.624 |
| Rv1096ko | -1.33 | 0.86 |
| Rv3684ko | -0.91 | 0.128 |
| delta_otsA_trehalose | 0.152 | 0.291 |